Browse Element(s) Details


Os.25171.1.A1_at

Description gb:CB619380
DB_XREF= gi:29614367
DB_XREF=OSIIEa03O09.r
CLONE=OSIIEa03O09
TID=Os.25171.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=4
UG=Os.25171 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_173546.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g471408/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47120Os.8026.1.S1_at7/1111+27776991..27780163ATP-citrate synthase, putative
LOC_Os11g47130Os.11506.1.S1_at4/1111+27781691..27789070Importin-beta N-terminal domain containing protein, expressed
LOC_Os11g47140Os.25171.1.A1_at8/1111+27798640..27804297Protein kinase domain containing protein, expressed
LOC_Os11g47140Os.25171.2.S1_at4/1111+27798640..27804297Protein kinase domain containing protein, expressed
LOC_Os11g47150OsAffx.19414.2.S1_at11/1111+27807168..27811469Protein kinase domain containing protein
LOC_Os11g47160NANA11+27812842..27815570Leucine Rich Repeat family protein
LOC_Os11g47170OsAffx.19417.1.S1_at4/1111+27815799..27816476Systemin receptor SR160 precursor, putative
LOC_Os11g47170OsAffx.19417.2.S1_x_at2/1111+27815799..27816476Systemin receptor SR160 precursor, putative
LOC_Os11g47170OsAffx.19417.1.S1_x_at1/1111+27815799..27816476Systemin receptor SR160 precursor, putative
LOC_Os11g47180OsAffx.31524.1.S1_at11/1111+27817912..27821316Leucine Rich Repeat family protein, expressed
LOC_Os11g47180OsAffx.31524.1.S1_x_at11/1111+27817912..27821316Leucine Rich Repeat family protein, expressed
LOC_Os11g47180OsAffx.31524.2.S1_x_at8/1111+27817912..27821316Leucine Rich Repeat family protein, expressed
LOC_Os11g47180OsAffx.19417.1.S1_x_at1/1111+27817912..27821316Leucine Rich Repeat family protein, expressed
LOC_Os11g47190NANA11+27825385..27831540transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25171.1.A1_at--172--2731Chr11:27803702..27803726 (25 bp)
AAGCACCGAAGCGTGTGTGCCGACA
LOC_Os11g47140
Os.25171.1.A1_at--285--5771NONE
GACGTCTACAGTTTCGGTATCGTGG
NONE
Os.25171.1.A1_at--848--10611Chr11:27803792..27803816 (25 bp)
TTCGGTATCGTGGTCTTAGAGCTCA
LOC_Os11g47140
Os.25171.1.A1_at--951--5671Chr11:27803915..27803939 (25 bp)
GACATATTGTCTGCAGAGGCTCTAC
LOC_Os11g47140
Os.25171.1.A1_at--176--8331Chr11:27803932..27803956 (25 bp)
GGCTCTACAACCTCACTGCATGGAG
LOC_Os11g47140
Os.25171.1.A1_at--626--1471Chr11:27803966..27803990 (25 bp)
AGAATGGCCGGCATTGCTGTCCAGT
LOC_Os11g47140
Os.25171.1.A1_at--517--4731NONE
GCTGTCCAGTGCCTTGAATACTACA
NONE
Os.25171.1.A1_at--543--6211Chr11:27804029..27804053 (25 bp)
GAGGCGCTACAGGAGCTTATCCAAT
LOC_Os11g47140
Os.25171.1.A1_at--198--1031Chr11:27804085..27804109 (25 bp)
AGGTCCGATGTTCAGACAACCCGTA
LOC_Os11g47140
Os.25171.1.A1_at--505--291Chr11:27804115..27804139 (25 bp)
ATAGTTTCGCTTTGTATCGTCGTTA
LOC_Os11g47140
Os.25171.1.A1_at--611--151NONE
ATTAGTGTGTGTACCATTTACCAAC
NONE
Target Sequence 
AAGCACCGAAGCGTGTGTGCCGACATGGGCTACATAGATCCTGTGTATATGATAACAGGCAATTTTAGACTGAAGAGTGA
CGTCTACAGTTTCGGTATCGTGGTCTTAGAGCTCATCNCCCGAAAGAAGGCCGTGTNCNATGGGAAAANCCTTCCGATAG
AATTTACCAACTGTTACGAGGATGATAATGCCAGAAGGAATATGTACGACCAGGACATATTGTCTGCAGAGGCTCTACAA
CCTCACTGCATGGAGTGCCTCGACAGAATGGCCGGCATTGCTGTCCAGTGCCTTGAATACTACATAGACAAGAGGCCGAC
TATGGCGGAGGCGCTACAGGAGCTTATCCAATTGAGAGCAAAGGTTGCAGCAAAAATGAATGCAGGTCCGATGTTCAGAC
AACCCGTACGTTGATAGTTTCGCTTTGTATCGTCGTTAATTTATTATCATATCCCCCAGCAAATGTCCAAACGTTGGTTT
CAGTTGACCAACGGGTCATTTTAATTTATCTTTTTAGCGGGGAAGTGTCGTTTTAATTAGTGTGTGTACCATTTACCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25171.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis