Browse Element(s) Details


OsAffx.19414.2.S1_at

Description tigr:9639.m04388
TID=OsAffx.19414.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=wall-associated protein kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4715011/11Protein kinase domain containing protein
LOC_Os11g468801/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47130Os.11506.1.S1_at4/1111+27781691..27789070Importin-beta N-terminal domain containing protein, expressed
LOC_Os11g47140Os.25171.1.A1_at8/1111+27798640..27804297Protein kinase domain containing protein, expressed
LOC_Os11g47140Os.25171.2.S1_at4/1111+27798640..27804297Protein kinase domain containing protein, expressed
LOC_Os11g47150OsAffx.19414.2.S1_at11/1111+27807168..27811469Protein kinase domain containing protein
LOC_Os11g47160NANA11+27812842..27815570Leucine Rich Repeat family protein
LOC_Os11g47170OsAffx.19417.1.S1_at4/1111+27815799..27816476Systemin receptor SR160 precursor, putative
LOC_Os11g47170OsAffx.19417.2.S1_x_at2/1111+27815799..27816476Systemin receptor SR160 precursor, putative
LOC_Os11g47170OsAffx.19417.1.S1_x_at1/1111+27815799..27816476Systemin receptor SR160 precursor, putative
LOC_Os11g47180OsAffx.31524.1.S1_at11/1111+27817912..27821316Leucine Rich Repeat family protein, expressed
LOC_Os11g47180OsAffx.31524.1.S1_x_at11/1111+27817912..27821316Leucine Rich Repeat family protein, expressed
LOC_Os11g47180OsAffx.31524.2.S1_x_at8/1111+27817912..27821316Leucine Rich Repeat family protein, expressed
LOC_Os11g47180OsAffx.19417.1.S1_x_at1/1111+27817912..27821316Leucine Rich Repeat family protein, expressed
LOC_Os11g47190NANA11+27825385..27831540transposon protein, putative, unclassified
LOC_Os11g47200NANA11+27832182..27835418transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009620biological_processresponse to fungi
GO:0009887biological_processorgan morphogenesis
GO:0009965biological_processleaf morphogenesis
GO:0016049biological_processcell growth
GO:0030155biological_processregulation of cell adhesion
GO:0042831biological_processdefense response to pathogenic fungi
GO:0051301biological_processcell division
GO:0005618cellular_componentcell wall
GO:0005739cellular_componentmitochondrion
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19414.2.S1_at--27--5791Chr11:27810761..27810785 (25 bp)
GACGAGCTAAGGGTCCAGTCACTAA
LOC_Os11g47150
OsAffx.19414.2.S1_at--421--7271Chr11:27810773..27810797 (25 bp)
GTCCAGTCACTAATCCAGCACGAAA
LOC_Os11g47150
OsAffx.19414.2.S1_at--328--5532Chr11:27810794..27810945 (25 bp)
GAAAACGTGCGCCTTGACATCGCCA
LOC_Os11g47150
OsAffx.19414.2.S1_at--717--9151Chr11:27810953..27810977 (25 bp)
TGCGAAGGCTCTTTCCTACATGCAC
LOC_Os11g47150
OsAffx.19414.2.S1_at--660--9251Chr11:27810978..27811002 (25 bp)
TCCTCTAGCCTTATGCATGGAGATG
LOC_Os11g47150
OsAffx.19414.2.S1_at--841--9231Chr11:27811021..27811045 (25 bp)
TCCTTGATGACAACCTGAACCCTAA
LOC_Os11g47150
OsAffx.19414.2.S1_at--531--7691Chr11:27811059..27811083 (25 bp)
GGGTCATCTGAGCTCATATTGAAAT
LOC_Os11g47150
OsAffx.19414.2.S1_at--668--4051Chr11:27811115..27811139 (25 bp)
CGATCCTGTGTGCATACTGACGAAC
LOC_Os11g47150
OsAffx.19414.2.S1_at--66--4971Chr11:27811231..27811255 (25 bp)
GCATCCGAGTAGAATTTGTGAACCA
LOC_Os11g47150
OsAffx.19414.2.S1_at--383--731Chr11:27811299..27811323 (25 bp)
ATGTTGTCGTCTACGGATTCCCTAT
LOC_Os11g47150
OsAffx.19414.2.S1_at--1136--7911Chr11:27811313..27811337 (25 bp)
GGATTCCCTATATCCTTACTGCATG
LOC_Os11g47150
Target Sequence 
GACGAGCTAAGGGTCCAGTCACTAATCCAGCACGAAAACGTGCGCCTTGACATCGCCATCGGCTCTGCGAAGGCTCTTTC
CTACATGCACTCCTCTAGCCTTATGCATGGAGATGTCAAGCCAGCCAACATCCTCCTTGATGACAACCTGAACCCTAAGG
TCTCTGACTTTGGGTCATCTGAGCTCATATTGAAATTCAAGCACGTGTGTGTTGACAAGAACTATGTCGATCCTGTGTGC
ATACTGACGAACAAGTATACTATGGAGAGCGATGTCTACAGCTATGGGGTCGTGCTCCTGGAGCTCATCACCCGGAAAAG
GGCCAAGTACGACGATGAAAGAAGCATCCGAGTAGAATTTGTGAACCAGTACAAAGACAACAACGAAAGGAGGAAGATGT
ATGACCAAGACATGTTGTCGTCTACGGATTCCCTATATCCTTACTGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19414.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis