Browse Element(s) Details


Os.25171.2.S1_at

Description gb:CB619116
DB_XREF= gi:29614103
DB_XREF=OSIIEa03H05.f
CLONE=OSIIEa03H05
TID=Os.25171.2
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.25171 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_173546.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g471404/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47120Os.8026.1.S1_at7/1111+27776991..27780163ATP-citrate synthase, putative
LOC_Os11g47130Os.11506.1.S1_at4/1111+27781691..27789070Importin-beta N-terminal domain containing protein, expressed
LOC_Os11g47140Os.25171.1.A1_at8/1111+27798640..27804297Protein kinase domain containing protein, expressed
LOC_Os11g47140Os.25171.2.S1_at4/1111+27798640..27804297Protein kinase domain containing protein, expressed
LOC_Os11g47150OsAffx.19414.2.S1_at11/1111+27807168..27811469Protein kinase domain containing protein
LOC_Os11g47160NANA11+27812842..27815570Leucine Rich Repeat family protein
LOC_Os11g47170OsAffx.19417.1.S1_at4/1111+27815799..27816476Systemin receptor SR160 precursor, putative
LOC_Os11g47170OsAffx.19417.2.S1_x_at2/1111+27815799..27816476Systemin receptor SR160 precursor, putative
LOC_Os11g47170OsAffx.19417.1.S1_x_at1/1111+27815799..27816476Systemin receptor SR160 precursor, putative
LOC_Os11g47180OsAffx.31524.1.S1_at11/1111+27817912..27821316Leucine Rich Repeat family protein, expressed
LOC_Os11g47180OsAffx.31524.1.S1_x_at11/1111+27817912..27821316Leucine Rich Repeat family protein, expressed
LOC_Os11g47180OsAffx.31524.2.S1_x_at8/1111+27817912..27821316Leucine Rich Repeat family protein, expressed
LOC_Os11g47180OsAffx.19417.1.S1_x_at1/1111+27817912..27821316Leucine Rich Repeat family protein, expressed
LOC_Os11g47190NANA11+27825385..27831540transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25171.2.S1_at--850--491NONE
ATCGGCTGCGACACCATGGCGTTGC
NONE
Os.25171.2.S1_at--620--8911Chr11:27799154..27799178 (25 bp)
TGAGCTTAGACGAGGCTGCCCACGA
LOC_Os11g47140
Os.25171.2.S1_at--1089--6951NONE
GTAGCGCTCGACTGGAGCAACCGTA
NONE
Os.25171.2.S1_at--455--1411NONE
AGCAACCGTACTGAAAACCTGGCCT
NONE
Os.25171.2.S1_at--156--8471NONE
TGGCCTGGACATACAGCCCATGCAG
NONE
Os.25171.2.S1_at--68--1471Chr11:27801182..27801206 (25 bp)
AGAAGTGTCGTTACAGTGCTTGATT
LOC_Os11g47140
Os.25171.2.S1_at--741--1511NONE
AGCAGCAACGGATCGTGCTCGTCAA
NONE
Os.25171.2.S1_at--886--9131NONE
TGCGTCAACACCACCAATGGACAGG
NONE
Os.25171.2.S1_at--178--251NONE
ATATCTTTGCAAGTGCTCCACGGGA
NONE
Os.25171.2.S1_at--656--851Chr11:27801336..27801360 (25 bp)
ATGGCAATCCCTACGTCACCGGTGA
LOC_Os11g47140
Os.25171.2.S1_at--71--10031Chr11:27801625..27801649 (25 bp)
TAGAAGAGAAGACCCTGCCAAGTAC
LOC_Os11g47140
Target Sequence 
ATCGGCTGCGACACCATGGCGTTGCTGCAGGGCAGGGACGACTGGAGCTTCCTCACCGGNTGCATCACGACGTGCGTGAG
CTTAGACGAGGCTGCCCACGACGGCGAGCAGTGCTCCGGGCTGGGTTGCTGCCAGGTGCCTTCCATCCCACCCAACCTTA
CCACCGTAGCGCTCGACTGGAGCAACCGTACTGAAAACCTGGCCTGGACATACAGCCCATGCAGCTACGCCTTCGTGGCT
GAGAAAGGATGGTANNNNNNNNNNNNNNNNNANNTNNNNCNNNNNNNNNNNAANANNNNNANNAANNNNNNTGGAGATAG
AAGTGTCGTTACAGTGCTTGATTGGGCTATCAGCAGCAACGGATCGTGCTCGTCAACATCGCGGGTTGCTCCTGCCTGTG
TCAGCCCCAACAGCTACTGCGTCAACACCACCAATGGACAGGGATATCTTTGCAAGTGCTCCACGGGATATGATGGCAAT
CCCTACGTCACCGGTGACAGTGGGTGTACAAATATTAATGAATGCAAGCTTAGAAGAGAAGACCCTGCCAAGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25171.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis