Browse Element(s) Details


Os.46845.1.S1_at

Description gb:AK108231.1
DB_XREF= gi:32993440
TID=Os.46845.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.46845 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0014J14.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-G03, full insert sequence.
FL= gb:AK108231.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1405011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g14020Os.4882.1.S1_at11/1110+7389078..7390228expressed protein
LOC_Os10g14030Os.46053.2.S1_x_at5/1110+7391341..7394355transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14040OsAffx.24317.1.S1_at10/1110+7399178..7405461transposon protein, putative, unclassified
LOC_Os10g14040OsAffx.24317.1.S1_x_at9/1110+7399178..7405461transposon protein, putative, unclassified
LOC_Os10g14040OsAffx.24317.6.S1_x_at4/1110+7399178..7405461transposon protein, putative, unclassified
LOC_Os10g14040OsAffx.19019.1.S1_at1/1110+7399178..7405461transposon protein, putative, unclassified
LOC_Os10g14050Os.46845.1.S1_at11/1110+7408004..7409188expressed protein
LOC_Os10g14060NANA10+7415451..7416643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14070OsAffx.20597.1.S1_at11/1110+7420622..7422124retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14080OsAffx.305.1.S1_at11/1110+7422608..7423081retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14100OsAffx.8347.1.S1_x_at11/1110+7425530..7426876retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14100OsAffx.8347.1.S1_at11/1110+7425530..7426876retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14120Os.26886.2.S1_s_at10/1110+7429635..7432722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14120Os.26886.6.S1_s_at8/1110+7429635..7432722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14120OsAffx.16467.1.S1_at3/1110+7429635..7432722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14120Os.46334.1.S1_x_at1/1110+7429635..7432722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14120Os.46334.1.S1_at1/1110+7429635..7432722transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46845.1.S1_at--744--4511Chr10:7408545..7408569 (25 bp)
GCCGCAAGGCCGGTAGCGTGATCAA
LOC_Os10g14050
Os.46845.1.S1_at--1149--4651Chr10:7408530..7408554 (25 bp)
GCGTGATCAAGGACATCCACCTCAA
LOC_Os10g14050
Os.46845.1.S1_at--303--5971Chr10:7408495..7408519 (25 bp)
GAGAAGAACAGGGTGCCGCCACCGC
LOC_Os10g14050
Os.46845.1.S1_at--1002--4011Chr10:7408274..7408298 (25 bp)
CGTCGTCCAGTTCACCTATGATGAA
LOC_Os10g14050
Os.46845.1.S1_at--341--8871Chr10:7408256..7408280 (25 bp)
TGATGAACCATCTCCTGCTTGCAGT
LOC_Os10g14050
Os.46845.1.S1_at--199--9251Chr10:7408244..7408268 (25 bp)
TCCTGCTTGCAGTATCATGTGATGG
LOC_Os10g14050
Os.46845.1.S1_at--505--411Chr10:7408231..7408255 (25 bp)
ATCATGTGATGGATGACGCCCGGGT
LOC_Os10g14050
Os.46845.1.S1_at--960--4251Chr10:7408212..7408236 (25 bp)
CCGGGTGATCTCGTAATTCCATCAT
LOC_Os10g14050
Os.46845.1.S1_at--956--9051Chr10:7408079..7408103 (25 bp)
TGCATTTCTGCACTACACTGTTATA
LOC_Os10g14050
Os.46845.1.S1_at--1028--2011Chr10:7408068..7408092 (25 bp)
ACTACACTGTTATATGCCTTTCCCA
LOC_Os10g14050
Os.46845.1.S1_at--792--8091Chr10:7408013..7408037 (25 bp)
GGACCAGTGATATCATCCATATATG
LOC_Os10g14050
Target Sequence 
GCCGCAAGGCCGGTAGCGTGATCAAGGACATCCACCTCAAGAAGGAGAGAGAGAAGAACAGGGTGCCGCCACCGCCGCCG
CCACCACCACCTCAGCCGGCGCCCGCAGCCAGGGCGGCGTTCGGCACCATATGTGGCGCCGGGGTGGCGCCGGGGCGCGC
CTGCCTCTGTCTCGGTCAGTGCCGCTGTCACTGCGGGGGAGGCTACGGCTGCCGCTGCTGCGGCGCGGCACCGCCGTGCT
ACTGCGTGCCGATCGGAGGAGGAGGCTGCTCCGTCGTCCAGTTCACCTATGATGAACCATCTCCTGCTTGCAGTATCATG
TGATGGATGACGCCCGGGTGATCTCGTAATTCCATCATAAATTTGGGAGAAGACAATACTAATTAAAGAAATAAGATATA
CCTTTAGTAGAAGCTTTAATTTACATGTAAGTACAATATAATGGCGAGTACAAATTTCATGTAATTTGCATTTCTGCACT
ACACTGTTATATGCCTTTCCCATAAAAAAAAGAAGAATATCATTGTAGAGTTGGACCAGTGATATCATCCATATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46845.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis