Browse Element(s) Details


Os.6177.2.S1_at

Description gb:AK068630.1
DB_XREF= gi:32978647
TID=Os.6177.2
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6177 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0014J14.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155I02, full insert sequence.
FL= gb:AK068630.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1419410/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g14130Os.26886.1.S1_x_at9/1110+7435556..7437385transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14130OsAffx.16244.1.S1_x_at1/1110+7435556..7437385transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14140Os.26886.3.S1_x_at3/1110+7438157..7438903transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14150OsAffx.30413.1.S1_at11/1110+7440420..7442393Ras-related protein Rab-2-B, putative
LOC_Os10g14160OsAffx.30414.1.S1_at11/1110+7446236..7446523hypothetical protein
LOC_Os10g14170Os.46707.1.A1_at11/1110+7450318..7451125hypothetical protein
LOC_Os10g14180Os.6177.1.S2_a_at11/1110+7457836..7461987expressed protein
LOC_Os10g14180Os.6177.3.S1_at10/1110+7457836..7461987expressed protein
LOC_Os10g14194Os.6177.2.S1_at10/1110+7461240..7467633expressed protein
LOC_Os10g14210OsAffx.18251.1.S1_at11/1110+7470513..7471111hypothetical protein
LOC_Os10g14210OsAffx.31134.1.S1_at1/1110+7470513..7471111hypothetical protein
LOC_Os10g14220OsAffx.8345.1.S1_at11/1110+7471987..7472284retrotransposon, putative, centromere-specific
LOC_Os10g14230Os.51987.1.S1_at2/1110+7477473..7479858hAT family dimerisation domain containing protein, expressed
LOC_Os10g14230Os.51987.1.S1_s_at1/1110+7477473..7479858hAT family dimerisation domain containing protein, expressed
LOC_Os10g14250NANA10+7490500..7491753retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6177.2.S1_at--258--4971NONE
GCATCGAGCTGCCAGGAGCTACAGT
NONE
Os.6177.2.S1_at--1152--2331Chr10:7461711..7461735 (25 bp)
AAAGACGATGGCTAACTCTGTATTC
LOC_Os10g14194
Os.6177.2.S1_at--127--1771Chr10:7461622..7461646 (25 bp)
ACCTGGAGAAGGCTTGCTCTGTCAA
LOC_Os10g14194
Os.6177.2.S1_at--627--1591Chr10:7461589..7461613 (25 bp)
AGCTCCCGCTAGACTGTGCGTGTTG
LOC_Os10g14194
Os.6177.2.S1_at--38--7271Chr10:7461553..7461577 (25 bp)
GTCCTAGTTACTACCATGGCATCCA
LOC_Os10g14194
Os.6177.2.S1_at--645--851Chr10:7461538..7461562 (25 bp)
ATGGCATCCAGTTATCATCATCAGA
LOC_Os10g14194
Os.6177.2.S1_at--890--6471Chr10:7461483..7461507 (25 bp)
GATACGGCTGCAGCATCATGATACA
LOC_Os10g14194
Os.6177.2.S1_at--1089--6931Chr10:7461386..7461410 (25 bp)
GTAGTTCGATTCTTGGTTGAGTTCC
LOC_Os10g14194
Os.6177.2.S1_at--1155--6371Chr10:7461326..7461350 (25 bp)
GATCGAATAGATGCCTTTTTCCATA
LOC_Os10g14194
Os.6177.2.S1_at--914--10671Chr10:7461294..7461318 (25 bp)
TTCCTATCCCTACTTCATTTCTTGT
LOC_Os10g14194
Os.6177.2.S1_at--757--10311Chr10:7461277..7461301 (25 bp)
TTTCTTGTAATTATGACCTCCCTTT
LOC_Os10g14194
Target Sequence 
GCATCGAGCTGCCAGGAGCTACAGTAGGAGTGGCCTGTGAAACTGGAGGTATAAAGACGATGGCTAACTCTGTATTCACA
GTAACTGATGAGAATGGCAACTTCACCATAGAACTCCCTTCTCGGCTCCATGCCACACCAAACCTGGAGAAGGCTTGCTC
TGTCAAGGTGCTCCAGCTCCCGCTAGACTGTGCGTGTTGGCCTCGCCGTAGTCCTAGTTACTACCATGGCATCCAGTTAT
CATCATCAGAGGATGGCATCCGCTCCTACACGACAGGGGTGATACGGCTGCAGCATCATGATACAAAGNCANNNNTGNCN
NTGNANCATGNTGGTACAGAATAGAATTGATGATAGACAAACAATTGTTGATGTAAAGTAGTTCGATTCTTGGTTGAGTT
CCATTTTCTTTAAATTTTCAAGAAGCGTAGTTGGGTAGATCGAATAGATGCCTTTTTCCATATATTTTCTTCCTATCCCT
ACTTCATTTCTTGTAATTATGACCTCCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6177.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis