Browse Element(s) Details


Os.46561.3.S1_at

Description gb:NM_194696.1
DB_XREF= gi:37530751
TID=Os.46561.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46561 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0020E23.13), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0378011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03730Os.46555.1.S1_x_at10/1110+1665240..1668358F-box domain containing protein, expressed
LOC_Os10g03730Os.46555.1.S1_at10/1110+1665240..1668358F-box domain containing protein, expressed
LOC_Os10g03730Os.46058.2.S1_x_at5/1110+1665240..1668358F-box domain containing protein, expressed
LOC_Os10g03730Os.46058.1.S1_at1/1110+1665240..1668358F-box domain containing protein, expressed
LOC_Os10g03740Os.46561.4.S1_x_at11/1110+1672479..1675372F-box domain containing protein, expressed
LOC_Os10g03740Os.46561.1.S1_at11/1110+1672479..1675372F-box domain containing protein, expressed
LOC_Os10g03740Os.46561.2.S1_at3/1110+1672479..1675372F-box domain containing protein, expressed
LOC_Os10g03750Os.46058.2.S1_x_at11/1110+1679068..1681989F-box domain containing protein, expressed
LOC_Os10g03750Os.46058.1.S1_at11/1110+1679068..1681989F-box domain containing protein, expressed
LOC_Os10g03750Os.46555.1.S1_x_at2/1110+1679068..1681989F-box domain containing protein, expressed
LOC_Os10g03760Os.46871.1.S1_at10/1110+1684480..1687105F-box domain containing protein, expressed
LOC_Os10g03760Os.46058.2.S1_x_at1/1110+1684480..1687105F-box domain containing protein, expressed
LOC_Os10g03760Os.8362.2.S1_x_at1/1110+1684480..1687105F-box domain containing protein, expressed
LOC_Os10g03770OsAffx.30564.2.S1_s_at11/1110+1688087..1688907hypothetical protein
LOC_Os10g03770OsAffx.30564.2.S1_x_at10/1110+1688087..1688907hypothetical protein
LOC_Os10g03770OsAffx.30564.1.S1_s_at6/1110+1688087..1688907hypothetical protein
LOC_Os10g03770OsAffx.30564.1.S1_at3/1110+1688087..1688907hypothetical protein
LOC_Os10g03770OsAffx.30564.3.S1_at1/1110+1688087..1688907hypothetical protein
LOC_Os10g03780Os.46561.3.S1_at11/1110+1691966..1699100F-box domain containing protein, expressed
LOC_Os10g03780Os.46561.2.S1_at11/1110+1691966..1699100F-box domain containing protein, expressed
LOC_Os10g03780Os.46561.4.S1_x_at4/1110+1691966..1699100F-box domain containing protein, expressed
LOC_Os10g03780OsAffx.30264.1.S1_at2/1110+1691966..1699100F-box domain containing protein, expressed
LOC_Os10g03780Os.8362.2.S1_x_at1/1110+1691966..1699100F-box domain containing protein, expressed
LOC_Os10g03790OsAffx.20771.1.S1_x_at11/1110+1699959..1700611hypothetical protein
LOC_Os10g03790OsAffx.20771.1.S1_at11/1110+1699959..1700611hypothetical protein
LOC_Os10g03800OsAffx.30262.1.S1_x_at11/1110+1701315..1701875hypothetical protein
LOC_Os10g03800OsAffx.30262.1.S1_at11/1110+1701315..1701875hypothetical protein
LOC_Os10g03809NANA10+1706335..1706961NA
LOC_Os10g03820OsAffx.18116.1.S1_at11/1110+1710568..1711389hypothetical protein
LOC_Os10g03830Os.27532.1.S1_a_at11/1110+1713491..1724273expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46561.3.S1_at--657--5591Chr10:1693368..1693392 (25 bp)
GAAATCTATTTCTGCTCCAAGTGTT
LOC_Os10g03780
Os.46561.3.S1_at--777--2051Chr10:1693343..1693367 (25 bp)
ACTTCTCTGACCATGTATAGTCCTG
LOC_Os10g03780
Os.46561.3.S1_at--924--1131Chr10:1693325..1693349 (25 bp)
AGTCCTGAGGGTTCGTTACATATAC
LOC_Os10g03780
Os.46561.3.S1_at--74--5671Chr10:1693295..1693319 (25 bp)
GACATGACATCGCTAGTGACTGCAT
LOC_Os10g03780
Os.46561.3.S1_at--833--9971Chr10:1693223..1693247 (25 bp)
TACCAGTATCTATGGAGCCTTTCTG
LOC_Os10g03780
Os.46561.3.S1_at--144--6071Chr10:1693185..1693208 (24 bp)
GAGTTCAATTATCAGGGTCCAAAGC
LOC_Os10g03780
Os.46561.3.S1_at--975--9011Chr10:1692411..1692435 (25 bp)
TGCAATGGTGTCCTGAATTCGTCAA
LOC_Os10g03780
Os.46561.3.S1_at--983--8931Chr10:1692375..1692399 (25 bp)
TGACTCTCGGCAAATGGTGCCTCGA
LOC_Os10g03780
Os.46561.3.S1_at--730--5131Chr10:1692366..1692390 (25 bp)
GCAAATGGTGCCTCGATGCAAACTT
LOC_Os10g03780
Os.46561.3.S1_at--1134--5531Chr10:1692191..1692311 (25 bp)
GAAACTCGCAAAGTGTACTTCGGAA
LOC_Os10g03780
Os.46561.3.S1_at--372--4871Chr10:1692046..1692070 (25 bp)
GCTAGTAGTGGCATAACCTCTGTTC
LOC_Os10g03780
Target Sequence 
GAAATCTATTTCTGCTCCAAGTGTTACTTCTCTGACCATGTATAGTCCTGAGGGTTCGTTACATATACTAAAGGACATGA
CATCGCTAGTGACTGCATCAGTTTCATTTAGTGAATTCAGAGTTCATTTTGATGCTAATGATTTCTACCAGTATCTATGG
AGCCTTTCTGGTGTTACAAATTTGGAGTTCAATTATCAGGGTCCAAAGCTGAAAATCGAAAACAATTTGCAATGGTGTCC
TGAATTCGTCAATGTTGTCAACCTGACTCTCGGCAAATGGTGCCTCGATGCAAACTTCTATGCACTAACTGTCTTCCTTC
AGAACTCACCAAAACTACAGAAGCTAACTCTGAAACTCGCAAAGTGTACTTCGGAAATACACCAAAGAATCATTGGTGAG
CTTACAGAAAGATCATTTACATGTGAGCACCTTAAGATTATCGAAGTGATATGCTTGGAAAATGATCCCCAGGTCATCCG
TGTGAAAGATTTCTTTGCTAGTAGTGGCATAACCTCTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46561.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis