Browse Element(s) Details


Os.46058.1.S1_at

Description gb:AK101761.1
DB_XREF= gi:32986970
TID=Os.46058.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46058 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0020E23.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033064B15, full insert sequence.
FL= gb:AK101761.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0375011/11F-box domain containing protein, expressed
LOC_Os10g037301/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03700OsAffx.19421.1.S1_at2/1110+1644919..1655502transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03700Os.46058.2.S1_x_at1/1110+1644919..1655502transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03710OsAffx.30261.2.S1_s_at11/1110+1656435..1659338hypothetical protein
LOC_Os10g03710OsAffx.30261.1.S1_at8/1110+1656435..1659338hypothetical protein
LOC_Os10g03720OsAffx.20772.1.S1_at11/1110+1662167..1662628hypothetical protein
LOC_Os10g03730Os.46555.1.S1_x_at10/1110+1665240..1668358F-box domain containing protein, expressed
LOC_Os10g03730Os.46555.1.S1_at10/1110+1665240..1668358F-box domain containing protein, expressed
LOC_Os10g03730Os.46058.2.S1_x_at5/1110+1665240..1668358F-box domain containing protein, expressed
LOC_Os10g03730Os.46058.1.S1_at1/1110+1665240..1668358F-box domain containing protein, expressed
LOC_Os10g03740Os.46561.4.S1_x_at11/1110+1672479..1675372F-box domain containing protein, expressed
LOC_Os10g03740Os.46561.1.S1_at11/1110+1672479..1675372F-box domain containing protein, expressed
LOC_Os10g03740Os.46561.2.S1_at3/1110+1672479..1675372F-box domain containing protein, expressed
LOC_Os10g03750Os.46058.2.S1_x_at11/1110+1679068..1681989F-box domain containing protein, expressed
LOC_Os10g03750Os.46058.1.S1_at11/1110+1679068..1681989F-box domain containing protein, expressed
LOC_Os10g03750Os.46555.1.S1_x_at2/1110+1679068..1681989F-box domain containing protein, expressed
LOC_Os10g03760Os.46871.1.S1_at10/1110+1684480..1687105F-box domain containing protein, expressed
LOC_Os10g03760Os.46058.2.S1_x_at1/1110+1684480..1687105F-box domain containing protein, expressed
LOC_Os10g03760Os.8362.2.S1_x_at1/1110+1684480..1687105F-box domain containing protein, expressed
LOC_Os10g03770OsAffx.30564.2.S1_s_at11/1110+1688087..1688907hypothetical protein
LOC_Os10g03770OsAffx.30564.2.S1_x_at10/1110+1688087..1688907hypothetical protein
LOC_Os10g03770OsAffx.30564.1.S1_s_at6/1110+1688087..1688907hypothetical protein
LOC_Os10g03770OsAffx.30564.1.S1_at3/1110+1688087..1688907hypothetical protein
LOC_Os10g03770OsAffx.30564.3.S1_at1/1110+1688087..1688907hypothetical protein
LOC_Os10g03780Os.46561.3.S1_at11/1110+1691966..1699100F-box domain containing protein, expressed
LOC_Os10g03780Os.46561.2.S1_at11/1110+1691966..1699100F-box domain containing protein, expressed
LOC_Os10g03780Os.46561.4.S1_x_at4/1110+1691966..1699100F-box domain containing protein, expressed
LOC_Os10g03780OsAffx.30264.1.S1_at2/1110+1691966..1699100F-box domain containing protein, expressed
LOC_Os10g03780Os.8362.2.S1_x_at1/1110+1691966..1699100F-box domain containing protein, expressed
LOC_Os10g03790OsAffx.20771.1.S1_x_at11/1110+1699959..1700611hypothetical protein
LOC_Os10g03790OsAffx.20771.1.S1_at11/1110+1699959..1700611hypothetical protein
LOC_Os10g03800OsAffx.30262.1.S1_x_at11/1110+1701315..1701875hypothetical protein
LOC_Os10g03800OsAffx.30262.1.S1_at11/1110+1701315..1701875hypothetical protein
LOC_Os10g03809NANA10+1706335..1706961NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46058.1.S1_at--123--7051Chr10:1679423..1679447 (25 bp)
GTAAAGCTCACTCAGTCTAAGGACA
LOC_Os10g03750
Os.46058.1.S1_at--211--8131Chr10:1679403..1679427 (25 bp)
GGACATGAAACATCAAAGCGGCACA
LOC_Os10g03750
Os.46058.1.S1_at--1106--351Chr10:1679392..1679416 (25 bp)
ATCAAAGCGGCACATTCCATCCAAA
LOC_Os10g03750
Os.46058.1.S1_at--648--8671Chr10:1679201..1679225 (25 bp)
TGTGCTACATGTCTGAGTACTTCAT
LOC_Os10g03750
Os.46058.1.S1_at--1159--7091Chr10:1679191..1679215 (25 bp)
GTCTGAGTACTTCATTAGGCCTTTA
LOC_Os10g03750
Os.46058.1.S1_at--962--872Chr10:1679175..1679199 (25 bp)
AGGCCTTTATATATGACGTGATATT
LOC_Os10g03750
Os.46058.1.S1_at--472--9811Chr10:1679151..1679175 (25 bp)
TAAAATTCCATATCGTACTTCCACT
LOC_Os10g03750
Os.46058.1.S1_at--710--7011Chr10:1679137..1679161 (25 bp)
GTACTTCCACTTTCTATTACTCGTT
LOC_Os10g03750
Os.46058.1.S1_at--50--9911Chr10:1679120..1679144 (25 bp)
TACTCGTTTTTATCTATCACTGCCT
LOC_Os10g03750
Os.46058.1.S1_at--495--10172Chr10:1679106..1679130 (25 bp)
TATCACTGCCTACTGTCAGGATGTG
LOC_Os10g03750
Os.46058.1.S1_at--928--9631Chr10:1679091..1679115 (25 bp)
TCAGGATGTGACCATTCTGACAATG
LOC_Os10g03750
Target Sequence 
GTAAAGCTCACTCAGTCTAAGGACATGAAACATCAAAGCGGCACATTCCATCCAAAAGATCGCTCTCTTCCGTCTTCCTC
TGATTCCAGTTGACTTCGAAAGCAGAGACATGTTTACTGATCTTCTTTGGAGCTATGATGTGAAGAATCATGTCTTTCGT
TGCATATAAGCTCAGTCGTCTTTTGCTTGTTTGCTTCTGTGATATTCCAAGAACCAAGACTATGTGCTACATGTCTGAGT
ACTTCATTAGGCCTTTATATATGACGTGATATTAAAATTCCATATCGTACTTCCACTTTCTATTACTCGTTTTTATCTAT
CACTGCCTACTGTCAGGATGTGACCATTCTGACAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46058.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis