Browse Element(s) Details


Os.46058.2.S1_x_at

Description gb:NM_194693.1
DB_XREF= gi:37530745
TID=Os.46058.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46058 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0020E23.10), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0375011/11F-box domain containing protein, expressed
LOC_Os10g037305/11F-box domain containing protein, expressed
LOC_Os10g037001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g037601/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03700OsAffx.19421.1.S1_at2/1110+1644919..1655502transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03700Os.46058.2.S1_x_at1/1110+1644919..1655502transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03710OsAffx.30261.2.S1_s_at11/1110+1656435..1659338hypothetical protein
LOC_Os10g03710OsAffx.30261.1.S1_at8/1110+1656435..1659338hypothetical protein
LOC_Os10g03720OsAffx.20772.1.S1_at11/1110+1662167..1662628hypothetical protein
LOC_Os10g03730Os.46555.1.S1_x_at10/1110+1665240..1668358F-box domain containing protein, expressed
LOC_Os10g03730Os.46555.1.S1_at10/1110+1665240..1668358F-box domain containing protein, expressed
LOC_Os10g03730Os.46058.2.S1_x_at5/1110+1665240..1668358F-box domain containing protein, expressed
LOC_Os10g03730Os.46058.1.S1_at1/1110+1665240..1668358F-box domain containing protein, expressed
LOC_Os10g03740Os.46561.4.S1_x_at11/1110+1672479..1675372F-box domain containing protein, expressed
LOC_Os10g03740Os.46561.1.S1_at11/1110+1672479..1675372F-box domain containing protein, expressed
LOC_Os10g03740Os.46561.2.S1_at3/1110+1672479..1675372F-box domain containing protein, expressed
LOC_Os10g03750Os.46058.2.S1_x_at11/1110+1679068..1681989F-box domain containing protein, expressed
LOC_Os10g03750Os.46058.1.S1_at11/1110+1679068..1681989F-box domain containing protein, expressed
LOC_Os10g03750Os.46555.1.S1_x_at2/1110+1679068..1681989F-box domain containing protein, expressed
LOC_Os10g03760Os.46871.1.S1_at10/1110+1684480..1687105F-box domain containing protein, expressed
LOC_Os10g03760Os.46058.2.S1_x_at1/1110+1684480..1687105F-box domain containing protein, expressed
LOC_Os10g03760Os.8362.2.S1_x_at1/1110+1684480..1687105F-box domain containing protein, expressed
LOC_Os10g03770OsAffx.30564.2.S1_s_at11/1110+1688087..1688907hypothetical protein
LOC_Os10g03770OsAffx.30564.2.S1_x_at10/1110+1688087..1688907hypothetical protein
LOC_Os10g03770OsAffx.30564.1.S1_s_at6/1110+1688087..1688907hypothetical protein
LOC_Os10g03770OsAffx.30564.1.S1_at3/1110+1688087..1688907hypothetical protein
LOC_Os10g03770OsAffx.30564.3.S1_at1/1110+1688087..1688907hypothetical protein
LOC_Os10g03780Os.46561.3.S1_at11/1110+1691966..1699100F-box domain containing protein, expressed
LOC_Os10g03780Os.46561.2.S1_at11/1110+1691966..1699100F-box domain containing protein, expressed
LOC_Os10g03780Os.46561.4.S1_x_at4/1110+1691966..1699100F-box domain containing protein, expressed
LOC_Os10g03780OsAffx.30264.1.S1_at2/1110+1691966..1699100F-box domain containing protein, expressed
LOC_Os10g03780Os.8362.2.S1_x_at1/1110+1691966..1699100F-box domain containing protein, expressed
LOC_Os10g03790OsAffx.20771.1.S1_x_at11/1110+1699959..1700611hypothetical protein
LOC_Os10g03790OsAffx.20771.1.S1_at11/1110+1699959..1700611hypothetical protein
LOC_Os10g03800OsAffx.30262.1.S1_x_at11/1110+1701315..1701875hypothetical protein
LOC_Os10g03800OsAffx.30262.1.S1_at11/1110+1701315..1701875hypothetical protein
LOC_Os10g03809NANA10+1706335..1706961NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46058.2.S1_x_at--317--4691Chr10:1680948..1680972 (25 bp)
GCGGCAAGCCTGTACTAAAGGACGT
LOC_Os10g03750
Os.46058.2.S1_x_at--1105--5752Chr10:1680928..1680952 (25 bp)
GACGTGGCATCACTAGTGAGCGCAT
LOC_Os10g03750
Os.46058.2.S1_x_at--1120--7372Chr10:1680913..1680937 (25 bp)
GTGAGCGCATCAGTGGTACTTTATT
LOC_Os10g03750
Os.46058.2.S1_x_at--1063--191Chr10:1680873..1680897 (25 bp)
ATTTCGATGCTTATGATCTCCGCCA
LOC_Os10g03750
Os.46058.2.S1_x_at--13--472Chr10:1680846..1680870 (25 bp)
ATCTCTGGAGCTTTTCTCACGTTAA
LOC_Os10g03750
Os.46058.2.S1_x_at--1143--792Chr10:1679930..1679954 (25 bp)
ATGGTGTCCAAAATTCTTCAATCTT
LOC_Os10g03750
Os.46058.2.S1_x_at--15--8693Chr10:1679644..1679668 (25 bp)
TGTGAGCACCTTACGAGTGTTGAAA
LOC_Os10g03750
Os.46058.2.S1_x_at--41--551Chr10:1679601..1679625 (25 bp)
ATCCCCTGGTGATCAACGTGGTTGA
LOC_Os10g03750
Os.46058.2.S1_x_at--33--3992Chr10:1679585..1679609 (25 bp)
CGTGGTTGACTTCTTTGTTGGTAGT
LOC_Os10g03750
Os.46058.2.S1_x_at--1060--6611Chr10:1679569..1679593 (25 bp)
GTTGGTAGTGGAATGTCTTCTTCTC
LOC_Os10g03750
Os.46058.2.S1_x_at--171--7151Chr10:1679555..1679579 (25 bp)
GTCTTCTTCTCAGATTCATATCGAA
LOC_Os10g03750
Target Sequence 
GCGGCAAGCCTGTACTAAAGGACGTGGCATCACTAGTGAGCGCATCAGTGGTACTTTATTGTGTGGAAAGCGGCAATTTC
GATGCTTATGATCTCCGCCACTATCTCTGGAGCTTTTCTCACGTTAAAGATTTGATTTTCAGTTATCAGGGGAGAAAGCT
GACAATTGAAAACAATTTGCAATGGTGTCCAAAATTCTTCAATCTTGTCGGCTTGACTCTGGGTAAATGGTGTCTGAATG
CAAACTTCTATGCACTAATTGTCTTCCTTCAAAACTCACCAAGATTGGAGAAACTGACTCTGATACTCGCTGAGGATAAT
TGTAAAACATCAGAAGTATTCATCGGTGAGCTTGAGGAAAAATCATTTACATGTGAGCACCTTACGAGTGTTGAAATGAA
ATGCTGGGAGGATGATCCCCTGGTGATCAACGTGGTTGACTTCTTTGTTGGTAGTGGAATGTCTTCTTCTCAGATTCATA
TCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46058.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis