Browse Element(s) Details

Os.46555.1.S1_x_at

Description

gb:AK064296.1
DB_XREF= gi:32974314
TID=Os.46555.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46555 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0020E23.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-A03, full insert sequence.
FL= gb:AK064296.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g03730	10/11	F-box domain containing protein, expressed
LOC_Os10g03750	2/11	F-box domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g03690	Os.8362.2.S1_x_at	10/11	10	+	1640759..1643397	F-box domain containing protein, expressed
LOC_Os10g03690	Os.8362.1.S1_at	9/11	10	+	1640759..1643397	F-box domain containing protein, expressed
LOC_Os10g03700	OsAffx.19421.1.S1_at	2/11	10	+	1644919..1655502	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03700	Os.46058.2.S1_x_at	1/11	10	+	1644919..1655502	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03710	OsAffx.30261.2.S1_s_at	11/11	10	+	1656435..1659338	hypothetical protein
LOC_Os10g03710	OsAffx.30261.1.S1_at	8/11	10	+	1656435..1659338	hypothetical protein
LOC_Os10g03720	OsAffx.20772.1.S1_at	11/11	10	+	1662167..1662628	hypothetical protein
LOC_Os10g03730	Os.46555.1.S1_x_at	10/11	10	+	1665240..1668358	F-box domain containing protein, expressed
LOC_Os10g03730	Os.46555.1.S1_at	10/11	10	+	1665240..1668358	F-box domain containing protein, expressed
LOC_Os10g03730	Os.46058.2.S1_x_at	5/11	10	+	1665240..1668358	F-box domain containing protein, expressed
LOC_Os10g03730	Os.46058.1.S1_at	1/11	10	+	1665240..1668358	F-box domain containing protein, expressed
LOC_Os10g03740	Os.46561.4.S1_x_at	11/11	10	+	1672479..1675372	F-box domain containing protein, expressed
LOC_Os10g03740	Os.46561.1.S1_at	11/11	10	+	1672479..1675372	F-box domain containing protein, expressed
LOC_Os10g03740	Os.46561.2.S1_at	3/11	10	+	1672479..1675372	F-box domain containing protein, expressed
LOC_Os10g03750	Os.46058.2.S1_x_at	11/11	10	+	1679068..1681989	F-box domain containing protein, expressed
LOC_Os10g03750	Os.46058.1.S1_at	11/11	10	+	1679068..1681989	F-box domain containing protein, expressed
LOC_Os10g03750	Os.46555.1.S1_x_at	2/11	10	+	1679068..1681989	F-box domain containing protein, expressed
LOC_Os10g03760	Os.46871.1.S1_at	10/11	10	+	1684480..1687105	F-box domain containing protein, expressed
LOC_Os10g03760	Os.46058.2.S1_x_at	1/11	10	+	1684480..1687105	F-box domain containing protein, expressed
LOC_Os10g03760	Os.8362.2.S1_x_at	1/11	10	+	1684480..1687105	F-box domain containing protein, expressed
LOC_Os10g03770	OsAffx.30564.2.S1_s_at	11/11	10	+	1688087..1688907	hypothetical protein
LOC_Os10g03770	OsAffx.30564.2.S1_x_at	10/11	10	+	1688087..1688907	hypothetical protein
LOC_Os10g03770	OsAffx.30564.1.S1_s_at	6/11	10	+	1688087..1688907	hypothetical protein
LOC_Os10g03770	OsAffx.30564.1.S1_at	3/11	10	+	1688087..1688907	hypothetical protein
LOC_Os10g03770	OsAffx.30564.3.S1_at	1/11	10	+	1688087..1688907	hypothetical protein
LOC_Os10g03780	Os.46561.3.S1_at	11/11	10	+	1691966..1699100	F-box domain containing protein, expressed
LOC_Os10g03780	Os.46561.2.S1_at	11/11	10	+	1691966..1699100	F-box domain containing protein, expressed
LOC_Os10g03780	Os.46561.4.S1_x_at	4/11	10	+	1691966..1699100	F-box domain containing protein, expressed
LOC_Os10g03780	OsAffx.30264.1.S1_at	2/11	10	+	1691966..1699100	F-box domain containing protein, expressed
LOC_Os10g03780	Os.8362.2.S1_x_at	1/11	10	+	1691966..1699100	F-box domain containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.46555.1.S1_x_at--743--67	2	Chr10:1665747..1665771 (25 bp)	ATGATCCCCTGGTGAACGTGGTTGA	LOC_Os10g03730
Os.46555.1.S1_x_at--940--693	1	Chr10:1665711..1665735 (25 bp)	GTAGTGGAATGTCTTCTGCTCAGAT	LOC_Os10g03730
Os.46555.1.S1_x_at--57--527	1	Chr10:1665643..1665667 (25 bp)	GAATCCGATAACATGGTTGGGTTTG	LOC_Os10g03730
Os.46555.1.S1_x_at--20--631	1	Chr10:1665541..1665565 (25 bp)	GATGAGGATGAGCAACGTTCACTTT	LOC_Os10g03730
Os.46555.1.S1_x_at--190--149	1	Chr10:1665531..1665555 (25 bp)	AGCAACGTTCACTTTTTCAATCTAA	LOC_Os10g03730
Os.46555.1.S1_x_at--283--823	1	Chr10:1665485..1665509 (25 bp)	GGCACATTCCGTCCAAAAGATCGCT	LOC_Os10g03730
Os.46555.1.S1_x_at--1029--363	1	Chr10:1665451..1665475 (25 bp)	CTTCCTCCTTTGATTCCAGTTGACT	LOC_Os10g03730
Os.46555.1.S1_x_at--448--525	2	Chr10:1679279..1679303 (25 bp)	GAATCATGTCTTTCGTTGCATATAA	LOC_Os10g03750
Os.46555.1.S1_x_at--972--1039	1	Chr10:1665339..1665363 (25 bp)	TTTTGCTTGCTTGCTTCTGTGATAT	LOC_Os10g03730
Os.46555.1.S1_x_at--424--77	1	Chr10:1665298..1665322 (25 bp)	ATGTGCTACATGTTTGAATACTTTA	LOC_Os10g03730
Os.46555.1.S1_x_at--360--1015	1	Chr10:1665240..1665264 (25 bp)	TATTAAAATCCCATATCGTGCTTTC	NONE

Target Sequence

ATGATCCCCTGGTGAACGTGGTTGACTTCTTTGTTGGTAGTGGAATGTCTTCTGCTCAGATTCATATCGAATACGAAGAC
AATGATGAGGATCAATTTCATATTGAATCCGATAACATGGTTGGGTTTGAGCTTGAGGACGAGGACGAGGACGAGGACGA
GGACGAGGACGAGGACGAGGACGAGGATGATGAGGACGAGGACGGGGATGAGGATGAGCAACGTTCACTTTTTCAATCTA
AGGACGTATGAAACGTCAAAGGGGCACATTCCGTCCAAAAGATCGCTCTCTTCCGTCTTCCTCCTTTGATTCCAGTTGAC
TTCGAAAGCACAGAGACATGTTTACTGATCTTCTTTGGAGCTAGGACGTGAAGAATCATGTCTTTCGTTGCATATAAGTT
CAGTCGTCTTTTGCTTGCTTGCTTCTGTGATATTCCAAGAACCAAGACTATGTGCTACATGTTTGAATACTTTATTAGGC
CTTTATATATGTTTTGCAAAGACGTGATATTAAAATCCCATATCGTGCTTTC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis