Browse Element(s) Details


Os.46426.1.S1_at

Description gb:AK063687.1
DB_XREF= gi:32973705
TID=Os.46426.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46426 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0072F04.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-F04, full insert sequence.
FL= gb:AK063687.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0391011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03850OsAffx.30264.1.S1_at11/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.27520.4.S1_a_at11/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.10255.1.S1_s_at7/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.38269.1.S1_x_at2/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.8362.2.S1_x_at1/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.51910.1.S1_x_at1/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03860Os.46707.1.A1_at2/1110+1736069..1736981expressed protein
LOC_Os10g03860Os.55601.1.S1_at1/1110+1736069..1736981expressed protein
LOC_Os10g03870Os.46806.1.S1_at10/1110+1739610..1742217F-box domain containing protein, expressed
LOC_Os10g03880OsAffx.30265.1.S1_at11/1110+1750494..1751369CAF1 family ribonuclease containing protein
LOC_Os10g03890OsAffx.4997.1.S1_at11/1110+1752563..1753140hypothetical protein
LOC_Os10g03900Os.46496.2.A1_at11/1110+1755159..1757329hypothetical protein
LOC_Os10g03900Os.8362.2.S1_x_at1/1110+1755159..1757329hypothetical protein
LOC_Os10g03910Os.46426.1.S1_at11/1110+1758934..1761825F-box domain containing protein, expressed
LOC_Os10g03920OsAffx.18117.1.S1_at11/1110+1767472..1768125zinc finger family protein, putative
LOC_Os10g03920OsAffx.18117.1.S1_x_at11/1110+1767472..1768125zinc finger family protein, putative
LOC_Os10g03930Os.5824.1.S1_at11/1110+1769229..1771680F-box domain containing protein, expressed
LOC_Os10g03940OsAffx.30266.1.S1_at11/1110+1773890..1774983hypothetical protein
LOC_Os10g03950OsAffx.8539.1.S1_at11/1110+1776363..1777238Legume lectins beta domain containing protein
LOC_Os10g03960OsAffx.30267.1.S1_at9/1110+1784206..1786243hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46426.1.S1_at--571--10471Chr10:1759343..1759367 (25 bp)
TTACCCGCGTCGAAGTTGTATGCTC
LOC_Os10g03910
Os.46426.1.S1_at--530--4831Chr10:1759257..1759281 (25 bp)
GCTCAGGTTCAGATCATACGCTGGT
LOC_Os10g03910
Os.46426.1.S1_at--628--9951Chr10:1759241..1759265 (25 bp)
TACGCTGGTGCTAGATCGAGTATGC
LOC_Os10g03910
Os.46426.1.S1_at--1134--10131Chr10:1759221..1759245 (25 bp)
TATGCGTGACCTGCAATTTTCTGGT
LOC_Os10g03910
Os.46426.1.S1_at--576--6451Chr10:1759170..1759194 (25 bp)
GATCAAGCATTCTCTGAACATTCCA
LOC_Os10g03910
Os.46426.1.S1_at--871--10491Chr10:1759145..1759169 (25 bp)
TTCAAAAATCGCTCTCTTGCAGTTA
LOC_Os10g03910
Os.46426.1.S1_at--165--9891Chr10:1759122..1759146 (25 bp)
TACATTCGTTGATTCCAGTTGAGTC
LOC_Os10g03910
Os.46426.1.S1_at--491--10231Chr10:1759033..1759057 (25 bp)
TATTGGTTCCTGTACTTGCATCCTT
LOC_Os10g03910
Os.46426.1.S1_at--679--571Chr10:1759014..1759038 (25 bp)
ATCCTTCTGTGATGTTCTGTTGTAC
LOC_Os10g03910
Os.46426.1.S1_at--795--551Chr10:1758963..1758987 (25 bp)
ATGCTTGGGTACTCTATTTGGCCTT
LOC_Os10g03910
Os.46426.1.S1_at--981--10191Chr10:1758949..1758973 (25 bp)
TATTTGGCCTTTATGTTTTACTGAC
LOC_Os10g03910
Target Sequence 
TTACCCGCGTCGAAGTTGTATGCTCGGAGGGTGATCCCCTGGTCAAAGATGTGGTCAACTTCTTTGTTAATAGTGGACTG
ACCTCTGCTCAGGTTCAGATCATACGCTGGTGCTAGATCGAGTATGCGTGACCTGCAATTTTCTGGTCTGAGGAGATATG
AAACGTCAAAAAGGATCAAGCATTCTCTGAACATTCCATTCAAAAATCGCTCTCTTGCAGTTACATTCGTTGATTCCAGT
TGAGTCAGAAAGCACATAGACATGTTTACTGCTTTTGTTTGGTGCTATGATGTCAGTAGAAGCAATCATGTATTGGTTCC
TGTACTTGCATCCTTCTGTGATGTTCTGTTGTACAGAAGATACTGCATGTCTGCATGTACATGCTTGGGTACTCTATTTG
GCCTTTATGTTTTACTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46426.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis