Browse Element(s) Details


OsAffx.30267.1.S1_at

Description tigr:9638.m00304
TID=OsAffx.30267.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g039609/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03910Os.46426.1.S1_at11/1110+1758934..1761825F-box domain containing protein, expressed
LOC_Os10g03920OsAffx.18117.1.S1_at11/1110+1767472..1768125zinc finger family protein, putative
LOC_Os10g03920OsAffx.18117.1.S1_x_at11/1110+1767472..1768125zinc finger family protein, putative
LOC_Os10g03930Os.5824.1.S1_at11/1110+1769229..1771680F-box domain containing protein, expressed
LOC_Os10g03940OsAffx.30266.1.S1_at11/1110+1773890..1774983hypothetical protein
LOC_Os10g03950OsAffx.8539.1.S1_at11/1110+1776363..1777238Legume lectins beta domain containing protein
LOC_Os10g03960OsAffx.30267.1.S1_at9/1110+1784206..1786243hypothetical protein
LOC_Os10g03970Os.46500.2.S1_at11/1110+1790877..1793610transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03970Os.46500.1.S1_at4/1110+1790877..1793610transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03980OsAffx.411.1.S1_at11/1110+1798619..1799149retrotransposon protein, putative, unclassified
LOC_Os10g03990OsAffx.20768.1.S1_at11/1110+1802311..1804703Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30267.1.S1_at--799--71NONE
ATTGCTCCGGTGAAATACATGCACG
NONE
OsAffx.30267.1.S1_at--984--9871Chr10:1785447..1785471 (25 bp)
TACATGCACGACAGCAACCAACAAT
LOC_Os10g03960
OsAffx.30267.1.S1_at--860--2632Chr10:8241292..8241311 (20 bp)
AACCAACAATCGATGCCGTGTCTGG
NONE
OsAffx.30267.1.S1_at--511--3053Chr10:8241294..8241318 (25 bp)
AATCGATGCCGTGTCTGGATCCGCT
NONE
OsAffx.30267.1.S1_at--14--9231NONE
TCCACCGTTTCAGTGCACACTATTT
NONE
OsAffx.30267.1.S1_at--883--5111Chr10:1784590..1784614 (25 bp)
GCACACTATTTGTTTCAGCAACCAA
LOC_Os10g03960
OsAffx.30267.1.S1_at--800--2631Chr10:1784571..1784595 (25 bp)
AACCAACTAGTTGCACTTCATAATA
LOC_Os10g03960
OsAffx.30267.1.S1_at--666--5431Chr10:1784533..1784557 (25 bp)
GAACCATAGTGAATTCAGGCCTCAT
LOC_Os10g03960
OsAffx.30267.1.S1_at--835--9631Chr10:1784519..1784543 (25 bp)
TCAGGCCTCATGATCATGTTCGTTT
LOC_Os10g03960
OsAffx.30267.1.S1_at--755--5251Chr10:1784484..1784508 (25 bp)
GAATCTGACTTCCATGCTTGTCTGG
LOC_Os10g03960
OsAffx.30267.1.S1_at--1003--6631Chr10:1784278..1784302 (25 bp)
GTTGTCAATTGGTCTGTGCAGTGTT
LOC_Os10g03960
Target Sequence 
ATTGCTCCGGTGAAATACATGCACGACAGCAACCAACAATCGATGCCGTGTCTGGATCCGCTCGTCTCCATCGGCAACGT
CGCCTCTCGGTCGATCTCCACCGTTTCAGTGCACACTATTTGTTTCAGCAACCAACTAGTTGCACTTCATAATATATGCC
AAACCAAGAACCATAGTGAATTCAGGCCTCATGATCATGTTCGTTTGAAGGAAAAGGAATCTGACTTCCATGCTTGTCTG
GATAACAAATTCAGTTTCAAGTTGTCAATTGGTCTGTGCAGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30267.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis