Browse Element(s) Details


OsAffx.30265.1.S1_at

Description tigr:9638.m00296
TID=OsAffx.30265.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=CAF1 family ribonuclease
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0388011/11CAF1 family ribonuclease containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03840OsAffx.30263.1.S1_at11/1110+1725136..1726654hypothetical protein
LOC_Os10g03850OsAffx.30264.1.S1_at11/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.27520.4.S1_a_at11/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.10255.1.S1_s_at7/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.38269.1.S1_x_at2/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.8362.2.S1_x_at1/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.51910.1.S1_x_at1/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03860Os.46707.1.A1_at2/1110+1736069..1736981expressed protein
LOC_Os10g03860Os.55601.1.S1_at1/1110+1736069..1736981expressed protein
LOC_Os10g03870Os.46806.1.S1_at10/1110+1739610..1742217F-box domain containing protein, expressed
LOC_Os10g03880OsAffx.30265.1.S1_at11/1110+1750494..1751369CAF1 family ribonuclease containing protein
LOC_Os10g03890OsAffx.4997.1.S1_at11/1110+1752563..1753140hypothetical protein
LOC_Os10g03900Os.46496.2.A1_at11/1110+1755159..1757329hypothetical protein
LOC_Os10g03900Os.8362.2.S1_x_at1/1110+1755159..1757329hypothetical protein
LOC_Os10g03910Os.46426.1.S1_at11/1110+1758934..1761825F-box domain containing protein, expressed
LOC_Os10g03920OsAffx.18117.1.S1_at11/1110+1767472..1768125zinc finger family protein, putative
LOC_Os10g03920OsAffx.18117.1.S1_x_at11/1110+1767472..1768125zinc finger family protein, putative
LOC_Os10g03930Os.5824.1.S1_at11/1110+1769229..1771680F-box domain containing protein, expressed
LOC_Os10g03940OsAffx.30266.1.S1_at11/1110+1773890..1774983hypothetical protein
LOC_Os10g03950OsAffx.8539.1.S1_at11/1110+1776363..1777238Legume lectins beta domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009451biological_processRNA modification
GO:0004540molecular_functionribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30265.1.S1_at--1136--9471Chr10:1750771..1750795 (25 bp)
TCTGCCTGCTACAGCTCGGGATCAC
LOC_Os10g03880
OsAffx.30265.1.S1_at--579--4291Chr10:1750835..1750859 (25 bp)
CCTCGTCGAGTTCATGTGGGATTTC
LOC_Os10g03880
OsAffx.30265.1.S1_at--571--6511Chr10:1750854..1750878 (25 bp)
GATTTCGACTTTGCCGGTTTCGACG
LOC_Os10g03880
OsAffx.30265.1.S1_at--187--4491Chr10:1750898..1750922 (25 bp)
GCCGGAGTCCGTACAGTTCTTGAGG
LOC_Os10g03880
OsAffx.30265.1.S1_at--1129--4211Chr10:1750906..1750930 (25 bp)
CCGTACAGTTCTTGAGGGCCCAGGG
LOC_Os10g03880
OsAffx.30265.1.S1_at--489--4651Chr10:1751041..1751065 (25 bp)
GCGGCATGTACGACGTCGCGTTCCT
LOC_Os10g03880
OsAffx.30265.1.S1_at--112--2111Chr10:1751251..1751275 (25 bp)
ACATGGCCGGGCAGAACAGCGTCAT
LOC_Os10g03880
OsAffx.30265.1.S1_at--209--8271Chr10:1751260..1751284 (25 bp)
GGCAGAACAGCGTCATGGCGATCCA
LOC_Os10g03880
OsAffx.30265.1.S1_at--787--7111Chr10:1751271..1751295 (25 bp)
GTCATGGCGATCCAGCTCTTCATGG
LOC_Os10g03880
OsAffx.30265.1.S1_at--1156--5871Chr10:1751295..1751319 (25 bp)
GAGCTGAGGAGAAGGTTCAATGACC
LOC_Os10g03880
OsAffx.30265.1.S1_at--1126--6751Chr10:1751309..1751333 (25 bp)
GTTCAATGACCTGGGAGGCAGCCTT
LOC_Os10g03880
Target Sequence 
TCTGCCTGCTACAGCTCGGGATCACCCTCTCCGCCGCCGACGGCCGTCTCCCCGTCGACGGCGCCCTCGTCGAGTTCATG
TGGGATTTCGACTTTGCCGGTTTCGACGCCCGCTACCACCGCCACGCGCCGGAGTCCGTACAGTTCTTGAGGGCCCAGGG
GTTCGACTTCGAGGCCGCGCGGCTCGCCGGCGTGCCCGCCCTCGCGTTCGCTGCGGAGCTCGCCGCCTCCGGCATCCTCG
GCCTCCGTGGCGTGACGTGGGTCGCCTTCGGCGGCATGTACGACGTCGCGTTCCTCCTCAGGCTGGCCACCGGCGGCGCG
CCGCTGCCGGCGACGAGGCTGGGCTTCCTGGCGCAGGTCGGCGCCGTCTTCGGCACCCAGGTGTTCGACGCCAAGCACAT
GGCGTCGCTGCTCCACATGCACGGCGGCCTCGCCGCCGTCGGAGGGATGCTCCGGCTGCCGCCGCAGCTGCCTCGCCGCC
ACATGGCCGGGCAGAACAGCGTCATGGCGATCCAGCTCTTCATGGAGCTGAGGAGAAGGTTCAATGACCTGGGAGGCAGC
CTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30265.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis