Browse Element(s) Details


OsAffx.14495.1.S1_x_at

Description tigr:9633.m00109
TID=OsAffx.14495.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0196011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01920NANA5+506831..507046Subtilisin-chymotrypsin inhibitor CI-1B, putative
LOC_Os05g01930OsAffx.30633.1.S1_at1/115+507554..509173hypothetical protein
LOC_Os05g01940Os.6261.1.S1_at10/115+515991..517710Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g01940OsAffx.18117.1.S1_x_at2/115+515991..517710Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g01950Os.50420.1.S1_s_at11/115+520220..521013expressed protein
LOC_Os05g01960OsAffx.14495.1.S1_x_at11/115+526294..526805expressed protein
LOC_Os05g01970Os.15723.1.S1_a_at11/115+530063..539815expressed protein
LOC_Os05g01990Os.19569.1.S1_x_at11/115+540918..544846DEAD/DEAH box helicase, putative, expressed
LOC_Os05g01990Os.19569.1.S1_at11/115+540918..544846DEAD/DEAH box helicase, putative, expressed
LOC_Os05g01990Os.19569.2.S1_at10/115+540918..544846DEAD/DEAH box helicase, putative, expressed
LOC_Os05g02000Os.46937.1.S1_at11/115+546832..550544expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14495.1.S1_x_at--1107--2731Chr05:526691..526715 (25 bp)
AAGAAGACCTGCAAGAACCTGAAGA
LOC_Os05g01960
OsAffx.14495.1.S1_x_at--674--5831Chr05:526686..526710 (25 bp)
GACCTGCAAGAACCTGAAGACGAAG
LOC_Os05g01960
OsAffx.14495.1.S1_x_at--177--3231Chr05:526680..526704 (25 bp)
CAAGAACCTGAAGACGAAGGAGGAT
LOC_Os05g01960
OsAffx.14495.1.S1_x_at--915--8011Chr05:526662..526686 (25 bp)
GGAGGATGCTGCAGGCGGCAACGTC
LOC_Os05g01960
OsAffx.14495.1.S1_x_at--149--4111Chr05:526606..526630 (25 bp)
CGAAGGGCCTGAAGAAGTCGCCGCC
LOC_Os05g01960
OsAffx.14495.1.S1_x_at--263--4011Chr05:526570..526594 (25 bp)
CGTCGCCGGAGCAAGTGAAGATGCC
LOC_Os05g01960
OsAffx.14495.1.S1_x_at--881--8971Chr05:526555..526579 (25 bp)
TGAAGATGCCGTGCCGGAGCTACTC
LOC_Os05g01960
OsAffx.14495.1.S1_x_at--448--9911Chr05:526535..526559 (25 bp)
TACTCCGCGGAGAACATAAAGCATC
LOC_Os05g01960
OsAffx.14495.1.S1_x_at--438--4691Chr05:526529..526553 (25 bp)
GCGGAGAACATAAAGCATCGGCTGA
LOC_Os05g01960
OsAffx.14495.1.S1_x_at--589--2491Chr05:526523..526547 (25 bp)
AACATAAAGCATCGGCTGACCAAGA
LOC_Os05g01960
OsAffx.14495.1.S1_x_at--640--10571Chr05:526475..526499 (25 bp)
TTCTACATCATACGCCGCTGCATCC
LOC_Os05g01960
Target Sequence 
AAGAAGACCTGCAAGAACCTGAAGACGAAGGAGGATGCTGCAGGCGGCAACGTCGCCGTGCGGAAGGAGCAGGTGATGAA
GACGACGAAGGGCCTGAAGAAGTCGCCGCCGCCGCCATCGTCGTCGCCGGAGCAAGTGAAGATGCCGTGCCGGAGCTACT
CCGCGGAGAACATAAAGCATCGGCTGACCAAGACGGTGAAGGAGCACCGGGCGCGCTTCTACATCATACGCCGCTGCATC
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14495.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis