Browse Element(s) Details


Os.15723.1.S1_a_at

Description gb:AK067116.1
DB_XREF= gi:32977134
TID=Os.15723.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15723 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023080F17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096K17, full insert sequence.
FL= gb:AK067116.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0197011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01920NANA5+506831..507046Subtilisin-chymotrypsin inhibitor CI-1B, putative
LOC_Os05g01930OsAffx.30633.1.S1_at1/115+507554..509173hypothetical protein
LOC_Os05g01940Os.6261.1.S1_at10/115+515991..517710Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g01940OsAffx.18117.1.S1_x_at2/115+515991..517710Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g01950Os.50420.1.S1_s_at11/115+520220..521013expressed protein
LOC_Os05g01960OsAffx.14495.1.S1_x_at11/115+526294..526805expressed protein
LOC_Os05g01970Os.15723.1.S1_a_at11/115+530063..539815expressed protein
LOC_Os05g01990Os.19569.1.S1_x_at11/115+540918..544846DEAD/DEAH box helicase, putative, expressed
LOC_Os05g01990Os.19569.1.S1_at11/115+540918..544846DEAD/DEAH box helicase, putative, expressed
LOC_Os05g01990Os.19569.2.S1_at10/115+540918..544846DEAD/DEAH box helicase, putative, expressed
LOC_Os05g02000Os.46937.1.S1_at11/115+546832..550544expressed protein
LOC_Os05g02010Os.11999.1.S1_at11/115+552864..554918expressed protein
LOC_Os05g02020Os.12684.1.S1_at11/115+555189..558490Protein kinase APK1A, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15723.1.S1_a_at--480--7871Chr05:532097..532121 (25 bp)
GGTTTAAGGCATTTGATCTGGCATC
LOC_Os05g01970
Os.15723.1.S1_a_at--57--6411Chr05:532111..532135 (25 bp)
GATCTGGCATCAAAACCTGAAGGTG
LOC_Os05g01970
Os.15723.1.S1_a_at--240--5311Chr05:532135..532159 (25 bp)
GAAGGAGTACCTACAACTGATTTCA
LOC_Os05g01970
Os.15723.1.S1_a_at--186--8831Chr05:532152..532176 (25 bp)
TGATTTCAGGGCTCTTTTTTCGCAA
LOC_Os05g01970
Os.15723.1.S1_a_at--205--3471Chr05:532158..532182 (25 bp)
CAGGGCTCTTTTTTCGCAAGTTAAT
LOC_Os05g01970
Os.15723.1.S1_a_at--989--5171Chr05:532173..532197 (25 bp)
GCAAGTTAATAGTCGCTTCTAAGAA
LOC_Os05g01970
Os.15723.1.S1_a_at--621--5331Chr05:532195..532219 (25 bp)
GAAGTATAATCTGTCAACGAGGCAC
LOC_Os05g01970
Os.15723.1.S1_a_at--376--5491Chr05:539178..539202 (25 bp)
GAACATTGTTGTCTGCTAATTATGG
LOC_Os05g01970
Os.15723.1.S1_a_at--227--10151Chr05:539278..539302 (25 bp)
TATAGGTTCCTTGAGACACAGAAGT
LOC_Os05g01970
Os.15723.1.S1_a_at--878--771Chr05:539317..539341 (25 bp)
ATGGGCCATGTTCATTTCAGATTAT
LOC_Os05g01970
Os.15723.1.S1_a_at--330--9631Chr05:539349..539373 (25 bp)
TCATGTTGTCCCCATGAAATGAAGG
LOC_Os05g01970
Target Sequence 
GGTTTAAGGCATTTGATCTGGCATCAAAACCTGAAGGTGAAGGAGTACCTACAACTGATTTCAGGGCTCTTTTTTCGCAA
GTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGCACAATATTTGTGATGGAATAATATGAAGTGTGTATTGAG
TGAGGAGGCTCCTGATGGAAGAGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGGCAAGTAGTTAAAGTAGACA
AACACGCACCTTACTTATCAGCAGTTCCNATTCAGCAACAACATCATATATAGGTTCCTTGAGACACAGAAGTGAAGGAA
GAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATCATGTTGTCCCCATGAAATGAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15723.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis