Browse Element(s) Details


Os.53618.1.S1_at

Description gb:AK073598.1
DB_XREF= gi:32983621
TID=Os.53618.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53618 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033047G19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033047G19, full insert sequence.
FL= gb:AK073598.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0204011/11replication factor-a protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02000Os.46937.1.S1_at11/115+546832..550544expressed protein
LOC_Os05g02010Os.11999.1.S1_at11/115+552864..554918expressed protein
LOC_Os05g02020Os.12684.1.S1_at11/115+555189..558490Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os05g02030OsAffx.14496.1.S1_at11/115+568308..569829OB-fold nucleic acid binding domain containing protein
LOC_Os05g02040Os.53618.1.S1_at11/115+571398..575870replication factor-a protein 1 containing protein, expressed
LOC_Os05g02050OsAffx.26687.1.S1_at11/115+577402..577786Mitochondrial import inner membrane translocase subunit Tim9, putative, expressed
LOC_Os05g02060Os.10155.1.S1_at11/115+578361..581363amino acid selective channel protein, putative, expressed
LOC_Os05g02070Os.12791.4.S1_x_at11/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.12791.2.S1_a_at11/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.14153.3.S1_x_at9/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.12791.1.S1_a_at8/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.12791.2.S1_x_at5/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02080OsAffx.31479.5.S1_x_at11/115+591006..597274hypothetical protein
LOC_Os05g02080OsAffx.9194.2.S1_at3/115+591006..597274hypothetical protein
LOC_Os05g02090OsAffx.31479.1.S1_x_at11/115+598844..604260AT hook motif-containing protein, putative
LOC_Os05g02090OsAffx.31479.4.S1_x_at9/115+598844..604260AT hook motif-containing protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53618.1.S1_at--21--2411Chr05:575325..575349 (25 bp)
AAACATCAGCCGGTGGAAGCTCCAT
LOC_Os05g02040
Os.53618.1.S1_at--346--8631Chr05:575349..575373 (25 bp)
TGGGTAACTACAACTCCATCGCTGG
LOC_Os05g02040
Os.53618.1.S1_at--690--3911Chr05:575370..575394 (25 bp)
CTGGCAACGGCAGCTCGGAGTGTTA
LOC_Os05g02040
Os.53618.1.S1_at--72--2491Chr05:575403..575427 (25 bp)
AACAGCCCGGGCACTATGCTAGAGA
LOC_Os05g02040
Os.53618.1.S1_at--842--1671Chr05:575475..575499 (25 bp)
AGCCTGGGCACTTTTCTAGAGACTG
LOC_Os05g02040
Os.53618.1.S1_at--993--7591Chr05:575549..575573 (25 bp)
GGGCACTTCGCTAGAGATTGTCCAG
LOC_Os05g02040
Os.53618.1.S1_at--700--5191Chr05:575641..575665 (25 bp)
GCAATCCTTTGTTGGTGGCTACTGA
LOC_Os05g02040
Os.53618.1.S1_at--515--2631Chr05:575755..575779 (25 bp)
AACCTGCCTTATGTTTATGCCTTTA
LOC_Os05g02040
Os.53618.1.S1_at--556--10431Chr05:575769..575793 (25 bp)
TTATGCCTTTATTACCTCCAATGTC
LOC_Os05g02040
Os.53618.1.S1_at--235--491Chr05:575815..575839 (25 bp)
ATCTGGACTTTGTATCGCTACCTTA
LOC_Os05g02040
Os.53618.1.S1_at--301--231Chr05:575846..575870 (25 bp)
ATATTGTCCTTGTCTGCAATCTTGT
LOC_Os05g02040
Target Sequence 
AAACATCAGCCGGTGGAAGCTCCATGGGTAACTACAACTCCATCGCTGGCAACGGCAGCTCGGAGTGTTACAAATGTAAA
CAGCCCGGGCACTATGCTAGAGACTGTCCAGGGCAGTCCACTGGTGGCTTGGAGTGTTTCAAATGTAAACAGCCTGGGCA
CTTTTCTAGAGACTGTCCAGTGCAGTCTACTGGTGGCTCGGAGTGTTTCAAATGTAAACAGCCTGGGCACTTCGCTAGAG
ATTGTCCAGGGCAGTCTACTGGCGCCCAGCACCAGACATATGGGAATAATGTTGCAGCATCAAGGGGTTACAATAGGCAA
TCCTTTGTTGGTGGCTACTGAAGTATTTTGCAAGGGAAGAAGCAGCAGCAGCAGCAGCATCTTGATTTTGTTCATCTTGG
ATGGCATCGGTGTATCGTGTATAGTTGTTAAACCTGCCTTATGTTTATGCCTTTATTACCTCCAATGTCCACTGGGCAGG
GAACCTTGTGATCTGGACTTTGTATCGCTACCTTAAAAAGTATATTGTCCTTGTCTGCAATCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53618.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis