Browse Element(s) Details


OsAffx.31361.1.S1_at

Description tigr:9639.m03466
TID=OsAffx.31361.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3820011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38150OsAffx.19227.1.S1_at11/1111+22117879..22122784hypothetical protein
LOC_Os11g38160OsAffx.14584.1.S1_at11/1111+22124289..22125964Sugar transporter family protein, expressed
LOC_Os11g38170Os.26840.1.S1_at11/1111+22129652..22136454Notchless homolog 1, putative, expressed
LOC_Os11g38170Os.23259.2.S1_x_at2/1111+22129652..22136454Notchless homolog 1, putative, expressed
LOC_Os11g38170Os.23259.1.S1_a_at1/1111+22129652..22136454Notchless homolog 1, putative, expressed
LOC_Os11g38180Os.57086.1.S1_at11/1111+22138020..22139689F-box domain containing protein, expressed
LOC_Os11g38190OsAffx.31360.1.S1_at11/1111+22141243..22142659hypothetical protein
LOC_Os11g38200OsAffx.31361.1.S1_at11/1111+22144469..22145890F-box domain containing protein
LOC_Os11g38210OsAffx.7335.1.S1_at11/1111+22148474..22148902expressed protein
LOC_Os11g38210Os.23172.1.S1_x_at1/1111+22148474..22148902expressed protein
LOC_Os11g38220OsAffx.19229.1.S1_s_at1/1111+22150250..22150678expressed protein
LOC_Os11g38220OsAffx.7335.1.S1_at1/1111+22150250..22150678expressed protein
LOC_Os11g38230OsAffx.19228.1.S1_at11/1111+22152816..22154225F-box domain containing protein
LOC_Os11g38240OsAffx.19229.1.S1_s_at11/1111+22155870..22156521expressed protein
LOC_Os11g38250Os.54000.1.S1_at11/1111+22157130..22158828expressed protein
LOC_Os11g38260Os.27862.1.S1_at10/1111+22159158..22161018harpin binding protein 1, putative, expressed
LOC_Os11g38260Os.12799.1.S1_s_at2/1111+22159158..22161018harpin binding protein 1, putative, expressed
LOC_Os11g38270OsAffx.31362.1.S1_at11/1111+22162134..22163672hypothetical protein
LOC_Os11g38280NANA11+22164708..22164968hypothetical protein
LOC_Os11g38290OsAffx.31422.1.S1_at10/1111+22169887..22171204hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31361.1.S1_at--1034--7051Chr11:22145019..22145043 (25 bp)
GTAAGTTCAGTGATGTTGCCTTCTA
LOC_Os11g38200
OsAffx.31361.1.S1_at--1010--1211Chr11:22144986..22145010 (25 bp)
AGTTCTACATTCTCAGCAAGCTCAC
LOC_Os11g38200
OsAffx.31361.1.S1_at--473--1711Chr11:22144963..22144987 (25 bp)
ACCACGAACCTCTTTGCGTTTGAGA
LOC_Os11g38200
OsAffx.31361.1.S1_at--901--1331Chr11:22144899..22144923 (25 bp)
AGAGGTGTGTCACTGAGCTGCCCCA
LOC_Os11g38200
OsAffx.31361.1.S1_at--961--4771Chr11:22144883..22144907 (25 bp)
GCTGCCCCAGGTTAAGGATAGCTAT
LOC_Os11g38200
OsAffx.31361.1.S1_at--189--5131Chr11:22144740..22144764 (25 bp)
GCACAAACCCTTTCAGATTCACTGA
LOC_Os11g38200
OsAffx.31361.1.S1_at--801--6591Chr11:22144696..22144720 (25 bp)
GATTGCATCTTCATTAGCCCATGTA
LOC_Os11g38200
OsAffx.31361.1.S1_at--145--10551Chr11:22144615..22144639 (25 bp)
TTCATTGATGGTTACCTCTTCCCTG
LOC_Os11g38200
OsAffx.31361.1.S1_at--1041--6131Chr11:22144550..22144574 (25 bp)
GAGGGATTGTACACTGGCACCTTTC
LOC_Os11g38200
OsAffx.31361.1.S1_at--327--4311Chr11:22144531..22144555 (25 bp)
CCTTTCGCTGCAGACATATCGGATG
LOC_Os11g38200
OsAffx.31361.1.S1_at--398--7991Chr11:22144511..22144535 (25 bp)
GGATGACAACTTTCGAGCACCAGAT
LOC_Os11g38200
Target Sequence 
GTAAGTTCAGTGATGTTGCCTTCTACCAGGGGAAGTTCTACATTCTCAGCAAGCTCACCACGAACCTCTTTGCGTTTGAG
ATCACGGAGGATGATTGCGGGATGATGGTTTCTCGTGTTGAGAGGTGTGTCACTGAGCTGCCCCAGGTTAAGGATAGCTA
TGGACAGAGGTGGAACATGGTAGAATGGCATGGGAAATTGTTGCTAGTTGTCAGATACATCGGTGGTTCTGAAGGTTGGC
ACAACATTTGCAAGGTTAGCGTATTCGTGATGGATGTAAGCACAAACCCTTTCAGATTCACTGAGATCAACAGCTTGGAT
GGCGATTGCATCTTCATTAGCCCATGTAGTAGCATGTCATTTCTTGCATGTCAGTATGATGGAATTGAAGATGATCTTGT
CTACTTCATTGATGGTTACCTCTTCCCTGCAAAAAATGGCCCCCCTTTTGACAGGTTTGTGTACAACATGAGGGATTGTA
CACTGGCACCTTTCGCTGCAGACATATCGGATGACAACTTTCGAGCACCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis