Browse Element(s) Details


OsAffx.19227.1.S1_at

Description tigr:9639.m03461
TID=OsAffx.19227.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3815011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38100OsAffx.7333.1.S1_at11/1111+22099355..22100803F-box domain containing protein
LOC_Os11g38110NANA11+22101852..22102217retrotransposon protein, putative, unclassified
LOC_Os11g38120Os.55133.1.S1_at10/1111+22103551..22105264F-box domain containing protein, expressed
LOC_Os11g38130Os.53273.1.S1_at11/1111+22109670..22111199F-box domain containing protein, expressed
LOC_Os11g38130Os.54729.1.S1_s_at3/1111+22109670..22111199F-box domain containing protein, expressed
LOC_Os11g38140Os.54729.1.S1_s_at11/1111+22113554..22115552F-box domain containing protein, expressed
LOC_Os11g38140Os.54729.1.S1_at11/1111+22113554..22115552F-box domain containing protein, expressed
LOC_Os11g38150OsAffx.19227.1.S1_at11/1111+22117879..22122784hypothetical protein
LOC_Os11g38160OsAffx.14584.1.S1_at11/1111+22124289..22125964Sugar transporter family protein, expressed
LOC_Os11g38170Os.26840.1.S1_at11/1111+22129652..22136454Notchless homolog 1, putative, expressed
LOC_Os11g38170Os.23259.2.S1_x_at2/1111+22129652..22136454Notchless homolog 1, putative, expressed
LOC_Os11g38170Os.23259.1.S1_a_at1/1111+22129652..22136454Notchless homolog 1, putative, expressed
LOC_Os11g38180Os.57086.1.S1_at11/1111+22138020..22139689F-box domain containing protein, expressed
LOC_Os11g38190OsAffx.31360.1.S1_at11/1111+22141243..22142659hypothetical protein
LOC_Os11g38200OsAffx.31361.1.S1_at11/1111+22144469..22145890F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19227.1.S1_at--320--9931Chr11:22120196..22120220 (25 bp)
TACGGTCATCTCACCTATGGCAAAG
LOC_Os11g38150
OsAffx.19227.1.S1_at--511--8291Chr11:22120057..22120081 (25 bp)
GGCTAATAATCCTCGTCCACAAAAT
LOC_Os11g38150
OsAffx.19227.1.S1_at--168--6671Chr11:22118738..22118762 (25 bp)
GTTGCACATGGCACAAACTCCTTTG
LOC_Os11g38150
OsAffx.19227.1.S1_at--995--3211Chr11:22118702..22118726 (25 bp)
CAAGGGTGAATCTCTGGTGCCAAAA
LOC_Os11g38150
OsAffx.19227.1.S1_at--907--1831Chr11:22118656..22118680 (25 bp)
ACGCACACTCTTTTTGGGTTACACA
LOC_Os11g38150
OsAffx.19227.1.S1_at--1092--8871Chr11:22118603..22118627 (25 bp)
TGAGGTCCCCACTAAAACAGCAGAG
LOC_Os11g38150
OsAffx.19227.1.S1_at--897--6051Chr11:22118581..22118605 (25 bp)
GAGTTGGCCATTAGTCATGTCTATA
LOC_Os11g38150
OsAffx.19227.1.S1_at--1101--5911Chr11:22118540..22118564 (25 bp)
GAGCATGTATACTCTGGCGTCTGCG
LOC_Os11g38150
OsAffx.19227.1.S1_at--410--6371Chr11:22118039..22118063 (25 bp)
GATCCTTTGCTTGCGACATGGACAT
LOC_Os11g38150
OsAffx.19227.1.S1_at--15--8231Chr11:22117996..22118020 (25 bp)
GGCAATTCCTAGTCAACTTTCACAT
LOC_Os11g38150
OsAffx.19227.1.S1_at--840--1731Chr11:22117928..22117952 (25 bp)
ACCATTTGTGTTTTGTCTCCTTGCA
LOC_Os11g38150
Target Sequence 
TACGGTCATCTCACCTATGGCAAAGGCCTGCCTATGGGAAAAACTGGCTAATAATCCTCGTCCACAAAATGGTTATGAAC
GACAGGCTGGAAACATCACTGTGTACAGAGTTGTGGAATCAGTTCTTGAGAGGTTGCACATGGCACAAACTCCTTTGCAT
TTTGAGTTCAAGGGTGAATCTCTGGTGCCAAAATTTCTTGGTTGTATATGCCAAACGCACACTCTTTTTGGGTTACACAT
TATTGAGAAGAAATGCAACTGTGTGAATGAGGTCCCCACTAAAACAGCAGAGTTGGCCATTAGTCATGTCTATAAAGGTC
TGCATTCAGAGAGCATGTATACTCTGGCGTCTGCGGTATGCTGTGATGATGAGGGGCGATCCTTTGCTTGCGACATGGAC
ATGATGAAGGGCATAGTCAAGGCAATTCCTAGTCAACTTTCACATTTGAATTTAACTCACATTTGGTTCAGAGTTATTCC
ATATCATCACCATTTGTGTTTTGTCTCCTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19227.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis