Browse Element(s) Details


Os.54729.1.S1_at

Description gb:AK106617.1
DB_XREF= gi:32991826
TID=Os.54729.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54729 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-A04, full insert sequence.
FL= gb:AK106617.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3814011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38090Os.27691.1.S1_x_at1/1111+22085027..22090731retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g38100OsAffx.7333.1.S1_at11/1111+22099355..22100803F-box domain containing protein
LOC_Os11g38110NANA11+22101852..22102217retrotransposon protein, putative, unclassified
LOC_Os11g38120Os.55133.1.S1_at10/1111+22103551..22105264F-box domain containing protein, expressed
LOC_Os11g38130Os.53273.1.S1_at11/1111+22109670..22111199F-box domain containing protein, expressed
LOC_Os11g38130Os.54729.1.S1_s_at3/1111+22109670..22111199F-box domain containing protein, expressed
LOC_Os11g38140Os.54729.1.S1_s_at11/1111+22113554..22115552F-box domain containing protein, expressed
LOC_Os11g38140Os.54729.1.S1_at11/1111+22113554..22115552F-box domain containing protein, expressed
LOC_Os11g38150OsAffx.19227.1.S1_at11/1111+22117879..22122784hypothetical protein
LOC_Os11g38160OsAffx.14584.1.S1_at11/1111+22124289..22125964Sugar transporter family protein, expressed
LOC_Os11g38170Os.26840.1.S1_at11/1111+22129652..22136454Notchless homolog 1, putative, expressed
LOC_Os11g38170Os.23259.2.S1_x_at2/1111+22129652..22136454Notchless homolog 1, putative, expressed
LOC_Os11g38170Os.23259.1.S1_a_at1/1111+22129652..22136454Notchless homolog 1, putative, expressed
LOC_Os11g38180Os.57086.1.S1_at11/1111+22138020..22139689F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54729.1.S1_at--309--6451Chr11:22114117..22114141 (25 bp)
GATCAGAAGCTTGACAAGATTGATT
LOC_Os11g38140
Os.54729.1.S1_at--120--8831Chr11:22114097..22114121 (25 bp)
TGATTCACTGAAAGATTATGTTTTG
LOC_Os11g38140
Os.54729.1.S1_at--691--6551Chr11:22114084..22114108 (25 bp)
GATTATGTTTTGTTCCTGGGTTTCA
LOC_Os11g38140
Os.54729.1.S1_at--528--10091Chr11:22114081..22114105 (25 bp)
TATGTTTTGTTCCTGGGTTTCAATT
LOC_Os11g38140
Os.54729.1.S1_at--896--5211Chr11:22113791..22113815 (25 bp)
GAATTATGTGTATTGATGGGAGCTC
LOC_Os11g38140
Os.54729.1.S1_at--602--6811Chr11:22113756..22113780 (25 bp)
GTTTAATACAAGAGGGCAAGAGCTG
LOC_Os11g38140
Os.54729.1.S1_at--968--271Chr11:22113613..22113637 (25 bp)
ATAGGTGACACCTTCAGCTAACTTA
LOC_Os11g38140
Os.54729.1.S1_at--990--9651Chr11:22113600..22113624 (25 bp)
TCAGCTAACTTAGGTGCCAGTGTTT
LOC_Os11g38140
Os.54729.1.S1_at--925--2511Chr11:22113594..22113618 (25 bp)
AACTTAGGTGCCAGTGTTTATTTTG
LOC_Os11g38140
Os.54729.1.S1_at--124--7431Chr11:22113581..22113605 (25 bp)
GTGTTTATTTTGATACCTCTTTCTG
LOC_Os11g38140
Os.54729.1.S1_at--202--3671Chr11:22113563..22113587 (25 bp)
CTTTCTGAAGAAACAAGACGATTGT
LOC_Os11g38140
Target Sequence 
GATCAGAAGCTTGACAAGATTGATTCACTGAAAGATTATGTTTTGTTCCTGGGTTTCAATTCCAGTATCTGCCTTTCAGC
TAAGGAATTTCCAAATTTAAGGCCAGGTTGTGCCTATCTCGCAGATGATTCTTATGAAGAGATAGGTATAAATAAACATA
CTCTGCGGGAGGTTGGCATTTGGAACTTCAAGAGTGAGACTCTTGAAAGCCTCGGTGATCCACAGTCTGTCCTTCCTTGG
CTTAACTGGCCACCTCCAATTTGGATTACGTCCTCCATTCTTTAGAAAGAAAGAGCTGAGTTATTGTCAGGAGCTCCTAT
TTAGATGAATTATGTGTATTGATGGGAGCTCGATCTCTGTTGTTTAATACAAGAGGGCAAGAGCTGAGGAGCTCCAATTT
GTTCAAATTCAACATGTAGTAATTTGTCCTGTTGGGACAAATTCTTTCTGTATTAGTTAGGTCATCTTGTTTGAATAACA
CCGTTGTTGGTTAGAAGCTCCTATATAGGTGACACCTTCAGCTAACTTAGGTGCCAGTGTTTATTTTGATACCTCTTTCT
GAAGAAACAAGACGATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54729.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis