Browse Element(s) Details


Os.12799.1.S1_s_at

Description gb:AK112073.1
DB_XREF= gi:37988736
TID=Os.12799.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12799 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033060F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-G06, full insert sequence.
FL= gb:AK099372.1 gb:AK112073.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2385011/11expressed protein
LOC_Os11g382602/11harpin binding protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23810OsAffx.30487.1.S1_at3/115+13603340..13608640retrotransposon protein, putative, unclassified
LOC_Os05g23810Os.5711.1.S1_at2/115+13603340..13608640retrotransposon protein, putative, unclassified
LOC_Os05g23810OsAffx.30488.1.S1_at1/115+13603340..13608640retrotransposon protein, putative, unclassified
LOC_Os05g23820OsAffx.26988.1.S1_at11/115+13612408..13613059retrotransposon, putative, centromere-specific
LOC_Os05g23820OsAffx.26988.1.S1_x_at11/115+13612408..13613059retrotransposon, putative, centromere-specific
LOC_Os05g23830OsAffx.14829.1.S1_x_at2/115+13618392..13620045endo-1,4-beta-xylanase, putative
LOC_Os05g23830OsAffx.6363.1.S1_at1/115+13618392..13620045endo-1,4-beta-xylanase, putative
LOC_Os05g23840Os.46317.1.A1_at11/115+13624655..13628340expressed protein
LOC_Os05g23840OsAffx.14796.1.S1_at10/115+13624655..13628340expressed protein
LOC_Os05g23850OsAffx.4410.1.S1_at11/115+13630921..13633741expressed protein
LOC_Os05g23850Os.12799.1.S1_s_at11/115+13630921..13633741expressed protein
LOC_Os05g23850Os.22702.1.S1_x_at3/115+13630921..13633741expressed protein
LOC_Os05g23850Os.27530.1.S1_at1/115+13630921..13633741expressed protein
LOC_Os05g23860Os.1322.1.S1_at11/115+13637844..13642862Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os05g23870NANA5+13645973..13648082transposon protein, putative, Mutator sub-class
LOC_Os05g23880Os.27405.1.S1_at9/115+13656584..13662481Lipoxygenase family protein, expressed
LOC_Os05g23880OsAffx.10342.1.S1_x_at1/115+13656584..13662481Lipoxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12799.1.S1_s_at--967--3352Chr11:22159933..22160041 (25 bp)
CACCCTCGGGCAGGTGTTTCAGAGG
LOC_Os11g38260
Os.12799.1.S1_s_at--795--5012Chr11:22160027..22160050 (24 bp)
GCAGGTGTTTCAGAGGATCGATGTT
LOC_Os11g38260
Os.12799.1.S1_s_at--696--6391Chr05:13631258..13631282 (25 bp)
GATCGATGTTGTTAGCAAGGACTTC
LOC_Os05g23850
Os.12799.1.S1_s_at--502--3211Chr05:13631243..13631267 (25 bp)
CAAGGACTTCGGCAACATCGTCGAT
LOC_Os05g23850
Os.12799.1.S1_s_at--915--8111Chr05:13631240..13631264 (25 bp)
GGACTTCGGCAACATCGTCGATGTC
LOC_Os05g23850
Os.12799.1.S1_s_at--650--8231Chr05:13631233..13631257 (25 bp)
GGCAACATCGTCGATGTCGAGCTCG
LOC_Os05g23850
Os.12799.1.S1_s_at--145--3811Chr05:13631191..13631215 (25 bp)
CTGCCAGTGGAGGTGATGGCAACAC
LOC_Os05g23850
Os.12799.1.S1_s_at--1029--6131Chr05:13631182..13631206 (25 bp)
GAGGTGATGGCAACACTGGCTCACA
LOC_Os05g23850
Os.12799.1.S1_s_at--598--6231Chr05:13631177..13631201 (25 bp)
GATGGCAACACTGGCTCACAAGTTT
LOC_Os05g23850
Os.12799.1.S1_s_at--707--2472Chr05:13631171..13631195 (25 bp)
AACACTGGCTCACAAGTTTGGGATC
LOC_Os05g23850
Os.12799.1.S1_s_at--196--4831Chr05:13631164..13631188 (25 bp)
GCTCACAAGTTTGGGATCATCGGTG
LOC_Os05g23850
Target Sequence 
CACCCTCGGGCAGGTGTTTCAGAGGATCGATGTTGTTAGCAAGGACTTCGGCAACATCGTCGATGTCGAGCTCGGCGGGC
CATGGCTGCTGCTGCCAGTGGAGGTGATGGCAACACTGGCTCACAAGTTTGGGATCATCGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12799.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis