Browse Element(s) Details


Os.5711.1.S1_at

Description gb:AK105301.1
DB_XREF= gi:32990510
TID=Os.5711.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5711 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-A01, full insert sequence.
FL= gb:AK105301.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3261011/11expressed protein
LOC_Os05g229003/11retrotransposon protein, putative, LINE subclass
LOC_Os11g207502/11hypothetical protein
LOC_Os05g238102/11retrotransposon protein, putative, unclassified
LOC_Os12g346801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32560Os.57213.1.S1_at11/111+18186617..18187489expressed protein
LOC_Os01g32574Os.14491.2.S1_x_at1/111+18194418..18197244transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32574Os.47463.1.S1_x_at1/111+18194418..18197244transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32590NANA1+18197383..18198057transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32600NANA1+18201102..18204183transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32610Os.5711.1.S1_at11/111+18208627..18212333expressed protein
LOC_Os01g32610OsAffx.30488.1.S1_at1/111+18208627..18212333expressed protein
LOC_Os01g32630NANA1+18214350..18219792retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g32640Os.29827.1.S1_at11/111+18221758..18225456F-box domain containing protein, expressed
LOC_Os01g32640Os.29827.1.S1_x_at11/111+18221758..18225456F-box domain containing protein, expressed
LOC_Os01g32650NANA1+18229912..18230493hypothetical protein
LOC_Os01g32660Os.2619.1.S1_at11/111+18231640..18236983Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5711.1.S1_at--214--5791Chr01:18210537..18210561 (25 bp)
GACGAATTGAGTTTGCAGCGCATAT
LOC_Os01g32610
Os.5711.1.S1_at--54--10091Chr01:18210481..18210505 (25 bp)
TAGGGATCATGGTCACTTCTGTACA
LOC_Os01g32610
Os.5711.1.S1_at--206--3211Chr01:18210193..18210217 (25 bp)
CAATGTGGGCATGATCTACTGTCAA
LOC_Os01g32610
Os.5711.1.S1_at--117--3695Chr07:13360965..13360989 (25 bp)
CTTTGCTTCTTAAGGGAACCGATGA
NONE
Os.5711.1.S1_at--447--795Chr07:13361029..13361052 (24 bp)
ATGTGGTGGAATTCTTCTCCGTGTA
NONE
Os.5711.1.S1_at--724--10577Chr12:24531330..24531354 (25 bp)
TTCTCCGTGTATGGCTGGAACCTTA
NONE
Os.5711.1.S1_at--1041--5417Chr12:24531366..24531391 (25 bp)
GAAGCCTAGTCTTTTCTTCGTTTGT
NONE
Os.5711.1.S1_at--386--2371Chr01:18208787..18208811 (25 bp)
AAACCTTTGTTTGTGCTGTCATCTC
LOC_Os01g32610
Os.5711.1.S1_at--735--7115Chr07:13361148..13361172 (25 bp)
GTCAGTTGATGCATTTTGTACCCTT
NONE
Os.5711.1.S1_at--716--1156Chr07:13361184..13361208 (25 bp)
AGTCTTATGTACTCGTGTTCGGATT
NONE
Os.5711.1.S1_at--91--7931Chr01:18208690..18208714 (25 bp)
GGATTTTGGCTGTGTATACCCCACA
LOC_Os01g32610
Target Sequence 
GACGAATTGAGTTTGCAGCGCATATGTGAAGGATGGTTATTGTAATGTGTGAAGGCTAGGGATCATGGTCACTTCTGTAC
ATGCCACANNNNGTTCTCTTCAAAAGGAAGAATGTCATCACAAACAACAATGTGGGCATGATCTACTGTCAATATCATTT
TCATGGGAACACATTGGGCAAGGACTTGGTCTTTGCTTCTTAAGGGAACCGATGAAGAAATAGTTAAGAACTATTGCAAA
GTGTTGGAGAAGCATGTGGTGGAATTCTTCTCCGTGTATGGCTGGAACCTTAGAAGAAGATTGGAAGCCTAGTCTTTTCT
TCGTTTGTTGTTCTTAAAACCTTTGTTTGTGCTGTCATCTCTTATGTAATGGGAGAGGTCAGTTGATGCATTTTGTACCC
TTTTATTAGGGAGAGTCTTATGTACTCGTGTTCGGATTTTGGCTGTGTATACCCCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5711.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis