Browse Element(s) Details


Os.29827.1.S1_x_at

Description gb:AK109797.1
DB_XREF= gi:32995006
TID=Os.29827.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29827 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0455H0310.25 (P0455H0310.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-E08, full insert sequence.
FL= gb:AK109797.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3264011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32574Os.14491.2.S1_x_at1/111+18194418..18197244transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32574Os.47463.1.S1_x_at1/111+18194418..18197244transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32590NANA1+18197383..18198057transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32600NANA1+18201102..18204183transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32610Os.5711.1.S1_at11/111+18208627..18212333expressed protein
LOC_Os01g32610OsAffx.30488.1.S1_at1/111+18208627..18212333expressed protein
LOC_Os01g32630NANA1+18214350..18219792retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g32640Os.29827.1.S1_at11/111+18221758..18225456F-box domain containing protein, expressed
LOC_Os01g32640Os.29827.1.S1_x_at11/111+18221758..18225456F-box domain containing protein, expressed
LOC_Os01g32650NANA1+18229912..18230493hypothetical protein
LOC_Os01g32660Os.2619.1.S1_at11/111+18231640..18236983Protein kinase domain containing protein, expressed
LOC_Os01g32670Os.4618.1.S1_at11/111+18238384..18238990expressed protein
LOC_Os01g32680OsAffx.2133.1.S1_at11/111+18248999..18249478retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29827.1.S1_x_at--1--8431Chr01:18224954..18224978 (25 bp)
GGCCTGAAGTCCCAGTTTCGAAAAG
LOC_Os01g32640
Os.29827.1.S1_x_at--49--6031Chr01:18225019..18225043 (25 bp)
GAGAGTGCTCTCCACAAGGCAATGG
LOC_Os01g32640
Os.29827.1.S1_x_at--485--8171Chr01:18225072..18225096 (25 bp)
GGAACAGCTTAGTACTTCTCTTGGA
LOC_Os01g32640
Os.29827.1.S1_x_at--640--6091Chr01:18225149..18225173 (25 bp)
GATACTACCAGTGTCGTCAACGTCG
LOC_Os01g32640
Os.29827.1.S1_x_at--958--10331Chr01:18225185..18225209 (25 bp)
TTGTTGTGGACTCTCGTTACGGTAA
LOC_Os01g32640
Os.29827.1.S1_x_at--393--7031Chr01:18225206..18225230 (25 bp)
GTAAATACTACCAGCGTCGTCAACG
LOC_Os01g32640
Os.29827.1.S1_x_at--35--1871Chr01:18225231..18225255 (25 bp)
ACGACCAGCCGCAGGAGTTCAGGGA
LOC_Os01g32640
Os.29827.1.S1_x_at--593--911Chr01:18225261..18225285 (25 bp)
AGGCAGGGCGCAGCTAAACAAGTTT
LOC_Os01g32640
Os.29827.1.S1_x_at--178--9811Chr01:18225353..18225377 (25 bp)
TAACCATTAACACCATTCATTCGCC
LOC_Os01g32640
Os.29827.1.S1_x_at--678--10551Chr01:18225368..18225392 (25 bp)
TTCATTCGCCTGAGCACTGGTATAT
LOC_Os01g32640
Os.29827.1.S1_x_at--844--1951Chr01:18225383..18225407 (25 bp)
ACTGGTATATGCTTTCGATAACTCA
LOC_Os01g32640
Target Sequence 
GGCCTGAAGTCCCAGTTTCGAAAAGGAGCATGTCACGTTTGGAAAAAAGAAGAGGGGAAAGATATGAGAGTGCTCTCCAC
AAGGCAATGGAGAGGAAAGCTCGTTACATGGGTGGTGTGGAACAGCTTAGTACTTCTCTTGGAAGAAACTACAGAAGATC
AGAGAAGCCAATTGTTGTGGACTCTAGTTACGAGAGATACTACCAGTGTCGTCAACGTCGAGAGAAGCCAATTGTTGTGG
ACTCTCGTTACGGTAAATACTACCAGCGTCGTCAACGACGACCAGCCGCAGGAGTTCAGGGAAGGTGAGGCAGGGCGCAG
CTAAACAAGTTTGGAGGGAAGTAGGGTTGAAGGAGATTTGTATTCAGTGGTAGGAAGTTTATTTGTATTCAGAAATTACT
AACCATTAACACCATTCATTCGCCTGAGCACTGGTATATGCTTTCGATAACTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29827.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis