Browse Element(s) Details


OsAffx.2133.1.S1_at

Description tigr:9629.m03054
TID=OsAffx.2133.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3268011/11retrotransposon protein, putative, unclassified
LOC_Os05g245301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32640Os.29827.1.S1_at11/111+18221758..18225456F-box domain containing protein, expressed
LOC_Os01g32640Os.29827.1.S1_x_at11/111+18221758..18225456F-box domain containing protein, expressed
LOC_Os01g32650NANA1+18229912..18230493hypothetical protein
LOC_Os01g32660Os.2619.1.S1_at11/111+18231640..18236983Protein kinase domain containing protein, expressed
LOC_Os01g32670Os.4618.1.S1_at11/111+18238384..18238990expressed protein
LOC_Os01g32680OsAffx.2133.1.S1_at11/111+18248999..18249478retrotransposon protein, putative, unclassified
LOC_Os01g32700OsAffx.29264.2.S1_at11/111+18254535..18256551transposon protein, putative, unclassified
LOC_Os01g32700OsAffx.17743.1.S1_at1/111+18254535..18256551transposon protein, putative, unclassified
LOC_Os01g32710OsAffx.2134.1.S1_at10/111+18259699..18261206hydroxyproline-rich glycoprotein family protein, putative
LOC_Os01g32720Os.17016.1.S1_at10/111+18262735..18273925expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2133.1.S1_at--25--5452Chr07:12698467..12698491 (25 bp)
GAACGAAGGCACAACGGCGCAAACA
NONE
OsAffx.2133.1.S1_at--258--2151Chr01:18249066..18249090 (25 bp)
ACAGAGAGCACCATCGCAACGAGCA
LOC_Os01g32680
OsAffx.2133.1.S1_at--172--5932Chr07:12698509..12698533 (25 bp)
GAGCACGACGAGAGGAACCCACCGG
NONE
OsAffx.2133.1.S1_at--995--4073Chr02:17477568..17477871 (25 bp)
CGACGAGCTTCCAAAAGCGGCGGCT
NONE
OsAffx.2133.1.S1_at--441--10591Chr01:18249198..18249222 (25 bp)
TTCCGGCGGGTTGCAACGCCGATGA
LOC_Os01g32680
OsAffx.2133.1.S1_at--824--2871Chr01:18249222..18249246 (25 bp)
AAGGGATTGACGGTCTGCGGCTTCT
LOC_Os01g32680
OsAffx.2133.1.S1_at--1152--4571Chr01:18249331..18249355 (25 bp)
GCGCTACGAGCGACGGCTGCAACTA
LOC_Os01g32680
OsAffx.2133.1.S1_at--168--4611Chr01:18249340..18249364 (25 bp)
GCGACGGCTGCAACTAGAACACGAG
LOC_Os01g32680
OsAffx.2133.1.S1_at--987--6111Chr01:18249375..18249399 (25 bp)
GAGGGCGACTAGAGGATGCTATTTA
LOC_Os01g32680
OsAffx.2133.1.S1_at--175--79911Chr09:5623490..5623514 (25 bp)
GGATGCTATTTATAGGCTCGGATTA
NONE
OsAffx.2133.1.S1_at--95--9012Chr09:5623513..5623537 (25 bp)
TAAGGAGATCGAACTCGGAACGAAA
NONE
Target Sequence 
GAACGAAGGCACAACGGCGCAAACAGAGAGCACCATCGCAACGAGCACGACGAGAGGAACCCACCGGTGGTGACGGCGAC
GACAATCGACGACAGAAAACGGCCGGCGACGAGCTTCCAAAAGCGGCGGCTTCGGGTTGACGGCGACGACGGCTTTCCGG
CGGGTTGCAACGCCGATGAAGGGATTGACGGTCTGCGGCTTCTCCTCGCGAACCCGGTGAAAGCGACGGCGACCGGCGAC
GACCACCACGGCGACGGCGCGAGGCGGCTGAAGCGGCTACGGCGGCGGCGCTACGAGCGACGGCTGCAACTAGAACACGA
GGCAAACCGAAGAGGGCGACTAGAGGATGCTATTTATAGGCTCGGATTAAGGAGATCGAACTCGGAACGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2133.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis