Browse Element(s) Details


OsAffx.2134.1.S1_at

Description tigr:9629.m03057
TID=OsAffx.2134.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3271010/11hydroxyproline-rich glycoprotein family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32660Os.2619.1.S1_at11/111+18231640..18236983Protein kinase domain containing protein, expressed
LOC_Os01g32670Os.4618.1.S1_at11/111+18238384..18238990expressed protein
LOC_Os01g32680OsAffx.2133.1.S1_at11/111+18248999..18249478retrotransposon protein, putative, unclassified
LOC_Os01g32700OsAffx.29264.2.S1_at11/111+18254535..18256551transposon protein, putative, unclassified
LOC_Os01g32700OsAffx.17743.1.S1_at1/111+18254535..18256551transposon protein, putative, unclassified
LOC_Os01g32710OsAffx.2134.1.S1_at10/111+18259699..18261206hydroxyproline-rich glycoprotein family protein, putative
LOC_Os01g32720Os.17016.1.S1_at10/111+18262735..18273925expressed protein
LOC_Os01g32730Os.9779.1.S1_at11/111+18274599..18278510tetratricopeptide repeat, putative, expressed
LOC_Os01g32740OsAffx.11287.1.S1_at11/111+18283071..18283452hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2134.1.S1_at--367--6391Chr01:18259920..18259944 (25 bp)
GATCGCTTGGAAGCTAGGCCTTCAA
LOC_Os01g32710
OsAffx.2134.1.S1_at--675--8431Chr01:18259936..18259960 (25 bp)
GGCCTTCAAGGCAAGCAGCCGGAGA
LOC_Os01g32710
OsAffx.2134.1.S1_at--718--5071Chr01:18259950..18259974 (25 bp)
GCAGCCGGAGATTTCTGTTCTTTCA
LOC_Os01g32710
OsAffx.2134.1.S1_at--985--4691Chr01:18259985..18260009 (25 bp)
GCTGGATTAGCCTTACAAAACCCAA
LOC_Os01g32710
OsAffx.2134.1.S1_at--71--8151Chr01:18260033..18260057 (25 bp)
GGACAATACTGATCACCGTGCAGAT
LOC_Os01g32710
OsAffx.2134.1.S1_at--1033--5031Chr01:18260052..18260076 (25 bp)
GCAGATGCTTCACTTCCTCAAAAAG
LOC_Os01g32710
OsAffx.2134.1.S1_at--1143--5431Chr01:18260097..18260121 (25 bp)
GAACCTGTGGAGTCATCTTCGTAAA
LOC_Os01g32710
OsAffx.2134.1.S1_at--979--1371Chr01:18260222..18260246 (25 bp)
AGACCCTCAGAGGATGACTTAAGAA
LOC_Os01g32710
OsAffx.2134.1.S1_at--599--5971Chr01:18260276..18260300 (25 bp)
GAGAAAGACTCGACCTTGGCTAAAT
LOC_Os01g32710
OsAffx.2134.1.S1_at--106--1351NONE
AGAGATTTTGCAAGGCTTCACTCAA
NONE
OsAffx.2134.1.S1_at--610--2331Chr01:18260594..18260618 (25 bp)
AAAGTTCCATTCATTGCTGATGATG
LOC_Os01g32710
Target Sequence 
GATCGCTTGGAAGCTAGGCCTTCAAGGCAAGCAGCCGGAGATTTCTGTTCTTTCAGCAGAAGGCAGCTGGATTAGCCTTA
CAAAACCCAAGAACAGCTATGAGGAGAAGATTCGGACAATACTGATCACCGTGCAGATGCTTCACTTCCTCAAAAAGAAG
CCTGAGGAGCCTGAAAAGAACCTGTGGAGTCATCTTCGTAAAATTTTCGACAAATTTGAGGTTAGACCCTCAGAGGATGA
CTTAAGAAATCACCGTTTACTAATTAAGCATTTTGCTGAGAAAGACTCGACCTTGGCTAAATCAGAGATTTTGCAAGGCT
TCACTCAAGAAACTTCTAGGAAAAAGTTTAGTGAGGTTGGTTCAGATAAAGTGGAAATCAAAGTTCCATTCATTGCTGAT
GATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2134.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis