Browse Element(s) Details


Os.9779.1.S1_at

Description gb:AK072814.1
DB_XREF= gi:32982837
TID=Os.9779.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9779 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0520B06.12 (P0520B06.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023141A19, full insert sequence.
FL= gb:AK072814.1 gb:AK104796.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3273011/11tetratricopeptide repeat, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32700OsAffx.29264.2.S1_at11/111+18254535..18256551transposon protein, putative, unclassified
LOC_Os01g32700OsAffx.17743.1.S1_at1/111+18254535..18256551transposon protein, putative, unclassified
LOC_Os01g32710OsAffx.2134.1.S1_at10/111+18259699..18261206hydroxyproline-rich glycoprotein family protein, putative
LOC_Os01g32720Os.17016.1.S1_at10/111+18262735..18273925expressed protein
LOC_Os01g32730Os.9779.1.S1_at11/111+18274599..18278510tetratricopeptide repeat, putative, expressed
LOC_Os01g32740OsAffx.11287.1.S1_at11/111+18283071..18283452hypothetical protein
LOC_Os01g32750Os.11636.1.S1_at11/111+18287711..18295390TATA box-binding protein-associated factor, putative, expressed
LOC_Os01g32760NANA1+18296539..18298530hypothetical protein
LOC_Os01g32770Os.22577.2.S1_x_at11/111+18302726..18304161expressed protein
LOC_Os01g32770Os.22577.1.S1_x_at11/111+18302726..18304161expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0015995biological_processchlorophyll biosynthesis
GO:0009941cellular_componentchloroplast envelope
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9779.1.S1_at--848--6651Chr01:18275117..18275141 (25 bp)
GTTGAACATCTCTAAGCTGACCGGA
LOC_Os01g32730
Os.9779.1.S1_at--40--10491Chr01:18275079..18275103 (25 bp)
TTACAGAAGCCTACGGTGCGATCGC
LOC_Os01g32730
Os.9779.1.S1_at--343--4231Chr01:18275055..18275079 (25 bp)
CCGACTGCTACACTGAGCTTGGTGA
LOC_Os01g32730
Os.9779.1.S1_at--1006--1431Chr01:18274962..18274986 (25 bp)
AGAACCGTGTGTGCAACCTTTGAGA
LOC_Os01g32730
Os.9779.1.S1_at--138--10571Chr01:18274906..18274930 (25 bp)
TTCTTTGGCCTGTCTTGTAGCAACG
LOC_Os01g32730
Os.9779.1.S1_at--1038--8751Chr01:18274877..18274901 (25 bp)
TGTAGTGGACGCTCAGTTCATGGCT
LOC_Os01g32730
Os.9779.1.S1_at--316--6751Chr01:18274862..18274886 (25 bp)
GTTCATGGCTGTAACTGAGGCACAT
LOC_Os01g32730
Os.9779.1.S1_at--1070--6191Chr01:18274846..18274870 (25 bp)
GAGGCACATGCCATCTTTCAAGTTA
LOC_Os01g32730
Os.9779.1.S1_at--686--10571Chr01:18274789..18274813 (25 bp)
TTCTTTGTCTGGTCAAGATCGGCAC
LOC_Os01g32730
Os.9779.1.S1_at--539--2251Chr01:18274753..18274777 (25 bp)
AAATTTCTCCATCTGTTCCAAGTTA
LOC_Os01g32730
Os.9779.1.S1_at--510--751Chr01:18274717..18274741 (25 bp)
ATGTATCTGGCTATGCTTGTCCTGA
LOC_Os01g32730
Target Sequence 
GTTGAACATCTCTAAGCTGACCGGAGAGGACGCAGGTGTTACAGAAGCCTACGGTGCGATCGCCGACTGCTACACTGAGC
TTGGTGAGCTCGAGAAAGCAGGCAAGTTCTACGACAAGTACATCGCAAGACTGGAGAATGACTGAACAGATTTAAAGAAC
CGTGTGTGCAACCTTTGAGAGCTCAAGTAGGGCTGTGTCCCATCTTTTGCCTTCTTTGGCCTGTCTTGTAGCAACGTTTT
TGTAGTGGACGCTCAGTTCATGGCTGTAACTGAGGCACATGCCATCTTTCAAGTTATTTCTACTAAATAGTGTCATCAGA
TTTTTTTTTTCTTTGTCTGGTCAAGATCGGCACCATGTTGTGTAAAATTTCTCCATCTGTTCCAAGTTATAAGCATGGCT
ATGTATCTGGCTATGCTTGTCCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9779.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis