Browse Element(s) Details


OsAffx.29264.2.S1_at

Description tigr:9629.m03056
TID=OsAffx.29264.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=FAR1 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3270011/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32650NANA1+18229912..18230493hypothetical protein
LOC_Os01g32660Os.2619.1.S1_at11/111+18231640..18236983Protein kinase domain containing protein, expressed
LOC_Os01g32670Os.4618.1.S1_at11/111+18238384..18238990expressed protein
LOC_Os01g32680OsAffx.2133.1.S1_at11/111+18248999..18249478retrotransposon protein, putative, unclassified
LOC_Os01g32700OsAffx.29264.2.S1_at11/111+18254535..18256551transposon protein, putative, unclassified
LOC_Os01g32700OsAffx.17743.1.S1_at1/111+18254535..18256551transposon protein, putative, unclassified
LOC_Os01g32710OsAffx.2134.1.S1_at10/111+18259699..18261206hydroxyproline-rich glycoprotein family protein, putative
LOC_Os01g32720Os.17016.1.S1_at10/111+18262735..18273925expressed protein
LOC_Os01g32730Os.9779.1.S1_at11/111+18274599..18278510tetratricopeptide repeat, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29264.2.S1_at--248--9691Chr01:18255871..18255895 (25 bp)
TCACTCATTGTGGTTGTAAGGCCAA
LOC_Os01g32700
OsAffx.29264.2.S1_at--676--11Chr01:18256196..18256220 (25 bp)
CTGTTTTAAGACACCTAAGGGCACG
LOC_Os01g32700
OsAffx.29264.2.S1_at--503--1071Chr01:18256228..18256252 (25 bp)
AGGGATCCAGATTTTTTCTTCAGAT
LOC_Os01g32700
OsAffx.29264.2.S1_at--1133--191Chr01:18256251..18256275 (25 bp)
ATTTGAGGCCGATGAGGACCGACAT
LOC_Os01g32700
OsAffx.29264.2.S1_at--169--8111Chr01:18256266..18256290 (25 bp)
GGACCGACATCTAAAGCGACTATTT
LOC_Os01g32700
OsAffx.29264.2.S1_at--449--10831Chr01:18256290..18256314 (25 bp)
TTGGGCGGATAGTCAATCTCGTTTA
LOC_Os01g32700
OsAffx.29264.2.S1_at--342--2551Chr01:18256376..18256400 (25 bp)
AACTGCCATTTATTCCTTTTGTGGG
LOC_Os01g32700
OsAffx.29264.2.S1_at--832--3071Chr01:18256405..18256429 (25 bp)
AATCAGCACCGGAGCACTGTTGTGT
LOC_Os01g32700
OsAffx.29264.2.S1_at--609--6751Chr01:18256459..18256483 (25 bp)
GTTAAGGGCTATGAATGGCTGCTAA
LOC_Os01g32700
OsAffx.29264.2.S1_at--725--8471Chr01:18256474..18256498 (25 bp)
TGGCTGCTAAGCACCTTTTTAACCG
LOC_Os01g32700
OsAffx.29264.2.S1_at--589--3651Chr01:18256488..18256512 (25 bp)
CTTTTTAACCGCCATGTCCCAGAAG
LOC_Os01g32700
Target Sequence 
TCACTCATTGTGGTTGTAAGGCCAAACTGGTAATAGCTAAACAAGGACATAGATACAAGATTGAAACAATAGTAGAAGGA
GATGCTGAAACTGTTTTAAGACACCTAAGGGCACGAGAGGAAAGGGATCCAGATTTTTTCTTCAGATTTGAGGCCGATGA
GGACCGACATCTAAAGCGACTATTTTGGGCGGATAGTCAATCTCGTTTAGATTATGAAGCTTTTGGTGATGTTGTTGTAT
TTGACAGTACATACATGACCAACAGGTATAAACTGCCATTTATTCCTTTTGTGGGATTGAATCAGCACCGGAGCACTGTT
GTGTTTGGTTGTGGCATAATTGCAGAGGAAACTGTTAAGGGCTATGAATGGCTGCTAAGCACCTTTTTAACCGCCATGTC
CCAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29264.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis