Browse Element(s) Details


Os.2619.1.S1_at

Description gb:CB656690
DB_XREF= gi:29660415
DB_XREF=OSJNEc11F06.r
CLONE=OSJNEc11F06
TID=Os.2619.1
CNT=19
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.2619 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Oryza sativa MAP kinase kinase 1 (P0455H0310.27), mRNA
FL= gb:AF216314.1 gb:AK059461.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3266011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32610Os.5711.1.S1_at11/111+18208627..18212333expressed protein
LOC_Os01g32610OsAffx.30488.1.S1_at1/111+18208627..18212333expressed protein
LOC_Os01g32630NANA1+18214350..18219792retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g32640Os.29827.1.S1_at11/111+18221758..18225456F-box domain containing protein, expressed
LOC_Os01g32640Os.29827.1.S1_x_at11/111+18221758..18225456F-box domain containing protein, expressed
LOC_Os01g32650NANA1+18229912..18230493hypothetical protein
LOC_Os01g32660Os.2619.1.S1_at11/111+18231640..18236983Protein kinase domain containing protein, expressed
LOC_Os01g32670Os.4618.1.S1_at11/111+18238384..18238990expressed protein
LOC_Os01g32680OsAffx.2133.1.S1_at11/111+18248999..18249478retrotransposon protein, putative, unclassified
LOC_Os01g32700OsAffx.29264.2.S1_at11/111+18254535..18256551transposon protein, putative, unclassified
LOC_Os01g32700OsAffx.17743.1.S1_at1/111+18254535..18256551transposon protein, putative, unclassified
LOC_Os01g32710OsAffx.2134.1.S1_at10/111+18259699..18261206hydroxyproline-rich glycoprotein family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0000165biological_processMAPKKK cascade
GO:0009611biological_processresponse to wounding
GO:0009628biological_processresponse to abiotic stimulus
GO:0005737cellular_componentcytoplasm
GO:0004708molecular_functionMAP kinase kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2619.1.S1_at--868--311Chr01:18234277..18234301 (25 bp)
ATACTCGAGTGTGCCATTGGTCGGT
LOC_Os01g32660
Os.2619.1.S1_at--306--7891Chr01:18234299..18234323 (25 bp)
GGTTCCCCTATATACCTTCAGAAGG
LOC_Os01g32660
Os.2619.1.S1_at--1073--5371Chr01:18234355..18234379 (25 bp)
GAAGCAATTGTTGACCAGCCACCAC
LOC_Os01g32660
Os.2619.1.S1_at--882--8091Chr01:18234393..18234417 (25 bp)
GGACCAGTTCTCTCCAGAATTTTGT
LOC_Os01g32660
Os.2619.1.S1_at--846--3131Chr01:18234410..18234434 (25 bp)
AATTTTGTGCATTTATCTCCTCCTG
LOC_Os01g32660
Os.2619.1.S1_at--480--10031Chr01:18236558..18236582 (25 bp)
TAGACCTGCGCATTCTTGTCGAGAG
LOC_Os01g32660
Os.2619.1.S1_at--850--10791Chr01:18236573..18236597 (25 bp)
TTGTCGAGAGCCTTGAACCTCCAAT
LOC_Os01g32660
Os.2619.1.S1_at--489--10811Chr01:18236638..18236662 (25 bp)
TTGTCGGTCTCTTGGTAGCGGCACA
LOC_Os01g32660
Os.2619.1.S1_at--665--2111Chr01:18236660..18236684 (25 bp)
ACATGTTCCCTGCATGCGATGTAGT
LOC_Os01g32660
Os.2619.1.S1_at--138--6691Chr01:18236759..18236783 (25 bp)
GTTGCCTCTTTTTATGGTCCTGTGA
LOC_Os01g32660
Os.2619.1.S1_at--814--7791Chr01:18236774..18236798 (25 bp)
GGTCCTGTGACTTGCGAGCATGACA
LOC_Os01g32660
Target Sequence 
ATACTCGAGTGTGCCATTGGTCGGTTCCCCTATATACCTTCAGAAGGGGAAGGTTGGTTAAGCTTCTACGAATTATTAGA
AGCAATTGTTGACCAGCCACCACCCTCTGCACCAGCGGACCAGTTCTCTCCAGAATTTTGTGCATTTATCTCCTCCTGNN
NNCANNTNNNACAAAAGGANTCNTGCNNGNGCNGATGTCNGCTTNAGANACTCTTGAATCATCCTTTCATCAAGAAGTTT
GAGGATAAGGATTTAGACCTGCGCATTCTTGTCGAGAGCCTTGAACCTCCAATGAATATATCCGAGTAACTTGTCATTGG
GAGGAATGAGGTTTTGTCGGTCTCTTGGTAGCGGCACATGTTCCCTGCATGCGATGTAGTGTGTATGATGTTGAAAATTC
GGGAGGAGTTGCAGTAATGTATCGGTATAATTTTTCTTTACCTAAGGCCCTTTTGTTGCCTCTTTTTATGGTCCTGTGAC
TTGCGAGCATGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2619.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis