Browse Element(s) Details


Os.22577.1.S1_x_at

Description gb:AK071246.1
DB_XREF= gi:32981269
TID=Os.22577.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.22577 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0520B06.17 (P0520B06.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088C07, full insert sequence.
FL= gb:AK071246.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3277011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32730Os.9779.1.S1_at11/111+18274599..18278510tetratricopeptide repeat, putative, expressed
LOC_Os01g32740OsAffx.11287.1.S1_at11/111+18283071..18283452hypothetical protein
LOC_Os01g32750Os.11636.1.S1_at11/111+18287711..18295390TATA box-binding protein-associated factor, putative, expressed
LOC_Os01g32760NANA1+18296539..18298530hypothetical protein
LOC_Os01g32770Os.22577.2.S1_x_at11/111+18302726..18304161expressed protein
LOC_Os01g32770Os.22577.1.S1_x_at11/111+18302726..18304161expressed protein
LOC_Os01g32780Os.7535.1.S1_at11/111+18317674..18320608universal stress protein family protein, expressed
LOC_Os01g32790Os.13027.1.S1_at9/111+18321451..18324615expressed protein
LOC_Os01g32800Os.22605.1.S1_at11/111+18326150..18329709PCI domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22577.1.S1_x_at--718--4231Chr01:18303215..18303239 (25 bp)
CCGAGGTCGAGACCGGCTCACACGT
LOC_Os01g32770
Os.22577.1.S1_x_at--904--2171Chr01:18303196..18303220 (25 bp)
ACACGTGAGCCAGGCCGAGCAGAGC
LOC_Os01g32770
Os.22577.1.S1_x_at--1104--8531Chr01:18303125..18303149 (25 bp)
TGGAGCTCACGCTCGGGTTCCAGCC
LOC_Os01g32770
Os.22577.1.S1_x_at--337--4151Chr01:18303059..18303083 (25 bp)
CGCGCTGCGACCTTAGCGGCTTGAG
LOC_Os01g32770
Os.22577.1.S1_x_at--12--1751Chr01:18303050..18303074 (25 bp)
ACCTTAGCGGCTTGAGCGCGGAGTC
LOC_Os01g32770
Os.22577.1.S1_x_at--493--7231Chr01:18303023..18303047 (25 bp)
GTCGCATCGGCCTGCGGCTCGAGCT
LOC_Os01g32770
Os.22577.1.S1_x_at--1156--1591Chr01:18303002..18303026 (25 bp)
AGCTGCCAGCGTGAGAAGCGGCGTC
LOC_Os01g32770
Os.22577.1.S1_x_at--1099--9331Chr01:18302979..18303003 (25 bp)
TCGCGAGCCGCGAGCTTTCTTTTAG
LOC_Os01g32770
Os.22577.1.S1_x_at--913--1651Chr01:18302974..18302998 (25 bp)
AGCCGCGAGCTTTCTTTTAGCTGAT
LOC_Os01g32770
Os.22577.1.S1_x_at--946--3931Chr01:18302771..18302795 (25 bp)
CGGCTGTGACAAAACTTGTTCAAAA
LOC_Os01g32770
Os.22577.1.S1_x_at--894--9691Chr01:18302752..18302776 (25 bp)
TCAAAATCGATAGAACAATCCAGAT
LOC_Os01g32770
Target Sequence 
CCGAGGTCGAGACCGGCTCACACGTGAGCCAGGCCGAGCAGAGCCCCGTGCCGGTGGAGCACGAAGAGGGGGAGGAGGAG
GAGGTCGGGCTGGAGCTCACGCTCGGGTTCCAGCCGCTCGTCGTGCGCGCCTCGAGGAGGCCTTCGTCGGCGGAGGCGCG
CTGCGACCTTAGCGGCTTGAGCGCGGAGTCGAGTCGCATCGGCCTGCGGCTCGAGCTGCCAGCGTGAGAAGCGGCGTCGC
GAGCCGCGAGCTTTCTTTTAGCTGATNGTAGACAGTTTTGGTTTCGTGCCAGAAGNGAAACANGAACAGAGGAAAACATC
ATTATTAGTTTTCTTTTTTTTTTTCACACCTTTTCTTTTTNGCTTGCTCTGCATCGTTGTAGGATTCCCATGTTCCTCCT
GTCATGTACTTGTGTGATGTCTGCCTGTACAGACTTTCTCAGATTCGGCTGTGACAAAACTTGTTCAAAATCGATAGAAC
AATCCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22577.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis