Browse Element(s) Details


Os.13027.1.S1_at

Description gb:AK058499.1
DB_XREF= gi:32968517
TID=Os.13027.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.13027 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0520B06.19 (P0520B06.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-F02, full insert sequence.
FL= gb:AK058499.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g327909/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32760NANA1+18296539..18298530hypothetical protein
LOC_Os01g32770Os.22577.2.S1_x_at11/111+18302726..18304161expressed protein
LOC_Os01g32770Os.22577.1.S1_x_at11/111+18302726..18304161expressed protein
LOC_Os01g32780Os.7535.1.S1_at11/111+18317674..18320608universal stress protein family protein, expressed
LOC_Os01g32790Os.13027.1.S1_at9/111+18321451..18324615expressed protein
LOC_Os01g32800Os.22605.1.S1_at11/111+18326150..18329709PCI domain containing protein, expressed
LOC_Os01g32810OsAffx.21149.1.S1_x_at7/111+18331624..18331974hypothetical protein
LOC_Os01g32830Os.26460.1.S1_a_at11/111+18340522..18343873expressed protein
LOC_Os01g32830Os.26460.2.S1_x_at10/111+18340522..18343873expressed protein
LOC_Os01g32830Os.53828.1.S1_at1/111+18340522..18343873expressed protein
LOC_Os01g32840Os.53269.1.S1_at11/111+18348854..18351596expressed protein
LOC_Os01g32840OsAffx.21148.2.S1_at9/111+18348854..18351596expressed protein
LOC_Os01g32840OsAffx.18305.1.S1_x_at1/111+18348854..18351596expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13027.1.S1_at--55--5911Chr01:18322635..18322659 (25 bp)
GAGCTGCTGCTATGATTCCTGACAT
LOC_Os01g32790
Os.13027.1.S1_at--907--2371Chr01:18322595..18322619 (25 bp)
AAACCGATACATGGCAACACTCACG
LOC_Os01g32790
Os.13027.1.S1_at--642--2471Chr01:18322580..18322604 (25 bp)
AACACTCACGCCACCAATTGAAGGG
LOC_Os01g32790
Os.13027.1.S1_at--1127--2431Chr01:18322548..18322572 (25 bp)
AAAAGGTGCGGGATGCTGCCAAGAA
LOC_Os01g32790
Os.13027.1.S1_at--873--5531Chr01:18322508..18322532 (25 bp)
GAAACTTCGCTGATTTTTACCTCAA
LOC_Os01g32790
Os.13027.1.S1_at--601--671Chr01:18321778..18321802 (25 bp)
ATGAACATGTCAGGCTGTCAGCTAT
LOC_Os01g32790
Os.13027.1.S1_at--272--10851Chr01:18321675..18321699 (25 bp)
TTGGTCATTTTCTTCTGGCTGGGAT
LOC_Os01g32790
Os.13027.1.S1_at--273--6791Chr01:18321545..18321569 (25 bp)
GTTAGATTTGCTTCTGCCATTTAGA
LOC_Os01g32790
Os.13027.1.S1_at--197--7971Chr01:18321463..18321487 (25 bp)
GGATCTTGATAATGGCTCCCGTGTT
LOC_Os01g32790
Os.13027.1.S1_at--871--3851NONE
CTGTCTGCCTCCTGAATTTAATCTG
NONE
Os.13027.1.S1_at--184--491NONE
ATCTGGATAGTCTGCTCCTTAGTTT
NONE
Target Sequence 
GAGCTGCTGCTATGATTCCTGACATGACACCATTCCCTGCAAACCGATACATGGCAACACTCACGCCACCAATTGAAGGG
TATATTGAAAAGGTGCGGGATGCTGCCAAGAAGTATTCTGTGAAGGAGAAACTTCGCTGATTTTTACCTCAAGGGAGGAA
AGGGTATCTAGAGGTACATGAACATGTCAGGCTGTCAGCTATGANAACAGAGCATACTTTGTNGATTGGCATATCAANTG
CAAGGAGAAATTGGGAAGCTTGTTCAATTTTCAGTGAGTTTTTGGTCATTTTCTTCTGGCTGGGATGCTNCATGAATGGC
AATTTCTGAAGCTCGATGGNCATTCGCTTTGTTTCATTGTTTGTTTGTTACGAATGTTGTATGCANCCACTTCTGTAATA
AGTTCCCGNCAGTTAGATTTGCTTCTGCCATTTAGATTTTNCGAACTTTTTTTTTACTNCTAAAATGNCTGTANCAAANC
AATNCCTCACTTAGGATCTTGATAATGGCTCCCGTGTTTCTNTNGNNNAATACCACTCTGTCTGCCTCCTGAATTTAATC
TGGATAGTCTGCTCCTTAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13027.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis