Browse Element(s) Details


OsAffx.18305.1.S1_x_at

Description tigr:9638.m01651
TID=OsAffx.18305.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2008011/11hypothetical protein
LOC_Os01g328401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20040NANA10+9723711..9728788retrotransposon protein, putative, unclassified
LOC_Os10g20050Os.24831.1.S1_x_at9/1110+9732797..9735020retrotransposon protein, putative, unclassified
LOC_Os10g20050Os.24831.3.S1_x_at6/1110+9732797..9735020retrotransposon protein, putative, unclassified
LOC_Os10g20050Os.24831.4.S1_x_at2/1110+9732797..9735020retrotransposon protein, putative, unclassified
LOC_Os10g20060OsAffx.20494.1.S1_x_at11/1110+9741844..9742850hypothetical protein
LOC_Os10g20060OsAffx.20494.2.S1_at10/1110+9741844..9742850hypothetical protein
LOC_Os10g20070Os.20602.2.S1_x_at11/1110+9744749..9746929hAT family dimerisation domain containing protein
LOC_Os10g20080OsAffx.18305.1.S1_at11/1110+9748013..9749270hypothetical protein
LOC_Os10g20080OsAffx.18305.1.S1_x_at11/1110+9748013..9749270hypothetical protein
LOC_Os10g20080Os.53269.1.S1_at1/1110+9748013..9749270hypothetical protein
LOC_Os10g20090Os.11623.1.S1_a_at11/1110+9758099..9763654Cellulose synthase family protein, expressed
LOC_Os10g20100NANA10+9765652..9766167hypothetical protein
LOC_Os10g20120OsAffx.30458.2.S1_at11/1110+9770391..9772793D-mannose binding lectin family protein, expressed
LOC_Os10g20120OsAffx.30458.1.S1_x_at3/1110+9770391..9772793D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18305.1.S1_x_at--579--6091Chr10:9748436..9748594 (25 bp)
GAGTAAATCTCTTGGTGGGAGCAAC
LOC_Os10g20080
OsAffx.18305.1.S1_x_at--987--451Chr10:9748442..9748600 (25 bp)
ATCTCTTGGTGGGAGCAACATCTGT
LOC_Os10g20080
OsAffx.18305.1.S1_x_at--1037--3751Chr10:9748444..9748602 (25 bp)
CTCTTGGTGGGAGCAACATCTGTTC
LOC_Os10g20080
OsAffx.18305.1.S1_x_at--1161--10811Chr10:9748586..9748605 (20 bp)
TTGGTGGGAGCAACATCTGTTCCTC
LOC_Os10g20080
OsAffx.18305.1.S1_x_at--43--7491Chr10:9748586..9748608 (23 bp)
GTGGGAGCAACATCTGTTCCTCCTA
LOC_Os10g20080
OsAffx.18305.1.S1_x_at--552--5951Chr10:9748588..9748612 (25 bp)
GAGCAACATCTGTTCCTCCTACGAT
LOC_Os10g20080
OsAffx.18305.1.S1_x_at--5--2091Chr10:9748593..9748617 (25 bp)
ACATCTGTTCCTCCTACGATTGGAT
LOC_Os10g20080
OsAffx.18305.1.S1_x_at--3--9271Chr10:9748601..9748625 (25 bp)
TCCTCCTACGATTGGATCTTCAAAA
LOC_Os10g20080
OsAffx.18305.1.S1_x_at--600--3271Chr10:9748621..9748641 (21 bp)
CAAAAAGAATTGTTAGGAGAGCTAT
LOC_Os10g20080
OsAffx.18305.1.S1_x_at--923--8772Chr10:9748631..9748743 (25 bp)
TGTTAGGAGAGCTATTTCATTGCTG
LOC_Os10g20080
OsAffx.18305.1.S1_x_at--577--8254Chr12:19716499..19716518 (20 bp)
GGCAGAGGAGGCATCACAGGACACC
NONE
Target Sequence 
GAGTAAATCTCTTGGTGGGAGCAACATCTGTTCCTCCTACGATTGGATCTTCAAAAAGAATTGTTAGGAGAGCTATTTCA
TTGCTGCCGCCCACTACTCTTCCAGCTCTGCCGACAACCACACCTACAAGAGCTACAGCTGAAGCAACACATAGGGCAGA
GGAGGCATCACAGGACACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18305.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis