Browse Element(s) Details


Os.53269.1.S1_at

Description gb:AK071691.1
DB_XREF= gi:32981714
TID=Os.53269.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53269 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023108N21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023108N21, full insert sequence.
FL= gb:AK071691.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3284011/11expressed protein
LOC_Os10g200801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32790Os.13027.1.S1_at9/111+18321451..18324615expressed protein
LOC_Os01g32800Os.22605.1.S1_at11/111+18326150..18329709PCI domain containing protein, expressed
LOC_Os01g32810OsAffx.21149.1.S1_x_at7/111+18331624..18331974hypothetical protein
LOC_Os01g32830Os.26460.1.S1_a_at11/111+18340522..18343873expressed protein
LOC_Os01g32830Os.26460.2.S1_x_at10/111+18340522..18343873expressed protein
LOC_Os01g32830Os.53828.1.S1_at1/111+18340522..18343873expressed protein
LOC_Os01g32840Os.53269.1.S1_at11/111+18348854..18351596expressed protein
LOC_Os01g32840OsAffx.21148.2.S1_at9/111+18348854..18351596expressed protein
LOC_Os01g32840OsAffx.18305.1.S1_x_at1/111+18348854..18351596expressed protein
LOC_Os01g32849Os.54264.1.S1_at11/111+18353418..18357190expressed protein
LOC_Os01g32860OsAffx.11288.1.S1_at2/111+18358262..18359463hypothetical protein
LOC_Os01g32870OsAffx.11289.1.S1_x_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870Os.14751.1.S1_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870OsAffx.11289.1.S1_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870Os.17037.3.S1_x_at1/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53269.1.S1_at--612--6971Chr01:18349771..18349795 (25 bp)
GTACCAACATTCAGGTTCGTTCAAA
LOC_Os01g32840
Os.53269.1.S1_at--576--10311Chr01:18349915..18349939 (25 bp)
TTTCTTGGTGGTAAATTCAGGCTAA
LOC_Os01g32840
Os.53269.1.S1_at--405--3191Chr01:18349943..18349967 (25 bp)
CAATGTACTGCTTTCTAACCTCTAA
LOC_Os01g32840
Os.53269.1.S1_at--614--6671Chr01:18349997..18350021 (25 bp)
GTTGCATATTTACTTACTTAGCTTC
LOC_Os01g32840
Os.53269.1.S1_at--479--2051Chr01:18350012..18350036 (25 bp)
ACTTAGCTTCTTATCCTGAATGGAT
LOC_Os01g32840
Os.53269.1.S1_at--219--10851Chr01:18350040..18350064 (25 bp)
TTGGTTTTTAGGGAGCAGCATTTGA
LOC_Os01g32840
Os.53269.1.S1_at--965--8772Chr01:28623608..28623632 (25 bp)
TGTTTTTTGGTTCCTCTGTTTCATA
NONE
Os.53269.1.S1_at--980--3772Chr10:9748711..9748735 (25 bp)
CTCTGTTTCATATTGCAGGCTATTT
LOC_Os10g20080
Os.53269.1.S1_at--1020--6291Chr01:18350275..18350299 (25 bp)
GATGAGGCATCACATGTCTGGCTTG
LOC_Os01g32840
Os.53269.1.S1_at--716--9691Chr01:18350284..18350308 (25 bp)
TCACATGTCTGGCTTGGATTCAATT
LOC_Os01g32840
Os.53269.1.S1_at--1089--6551Chr01:18350300..18350324 (25 bp)
GATTCAATTTGATGTTGCACTTTGT
LOC_Os01g32840
Target Sequence 
GTACCAACATTCAGGTTCGTTCAAAATAAGAAAATNCTAATTTCACCATGAATCAGAAAATTAATGTTTGGTATTTGTTT
GTTAATGGCTATGTAGGTTTAGTGGACTAATGGTATTTCTATTAGAATTATTCAGAAGAGTAAATTTCTTGGTGGTAAAT
TCAGGCTAATTGCAATGTACTGCTTTCTAACCTCTAATAATAATTTTTCCCAGTTCCNNCTCAANTGTTGCATATTTACT
TACTTAGCTTCTTATCCTGAATGGATGTTTTGGTTTTTAGGGAGCAGCATTTGATCCTCCTACAATTGGATCTTCAAAAA
CAATTGTTAGGAGAGTACATACCCAGACCTTTCTCAGCTTTGTAATGGTCTAAATACTAAATTTGTTGTTTTTTGGTTCC
TCTGTTTCATATTGCAGGCTATTTCATTGCTGCAGCCCACTACTCTTCTAGCTCTGCCGACAACCACACCTACAAGAGCT
ACAACTGAAGCATCACATAGGGCAGATGAGGCATCACATGTCTGGCTTGGATTCAATTTGATGTTGCACTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53269.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis