Browse Element(s) Details


Os.54264.1.S1_at

Description gb:AK102912.1
DB_XREF= gi:32988121
TID=Os.54264.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54264 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033113K17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033113K17, full insert sequence.
FL= gb:AK102912.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3284911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32800Os.22605.1.S1_at11/111+18326150..18329709PCI domain containing protein, expressed
LOC_Os01g32810OsAffx.21149.1.S1_x_at7/111+18331624..18331974hypothetical protein
LOC_Os01g32830Os.26460.1.S1_a_at11/111+18340522..18343873expressed protein
LOC_Os01g32830Os.26460.2.S1_x_at10/111+18340522..18343873expressed protein
LOC_Os01g32830Os.53828.1.S1_at1/111+18340522..18343873expressed protein
LOC_Os01g32840Os.53269.1.S1_at11/111+18348854..18351596expressed protein
LOC_Os01g32840OsAffx.21148.2.S1_at9/111+18348854..18351596expressed protein
LOC_Os01g32840OsAffx.18305.1.S1_x_at1/111+18348854..18351596expressed protein
LOC_Os01g32849Os.54264.1.S1_at11/111+18353418..18357190expressed protein
LOC_Os01g32860OsAffx.11288.1.S1_at2/111+18358262..18359463hypothetical protein
LOC_Os01g32870OsAffx.11289.1.S1_x_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870Os.14751.1.S1_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870OsAffx.11289.1.S1_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870Os.17037.3.S1_x_at1/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32880Os.2106.1.S1_a_at11/111+18378399..18381533Adaptin N terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54264.1.S1_at--922--3612Chr07:11522367..11522390 (24 bp)
CTTGGGATTACATTGGCTAAGTATC
NONE
Os.54264.1.S1_at--695--8312Chr07:11521939..11522377 (25 bp)
GGCTAAGTATCATTAAGTGTTCAAA
NONE
Os.54264.1.S1_at--716--10151Chr01:18353670..18353694 (25 bp)
TATCTGCAACTCTACTTTATTTAAA
LOC_Os01g32849
Os.54264.1.S1_at--249--5973Chr07:11522119..11522143 (25 bp)
GAGAAGTTGAGGATCACACATTCAC
NONE
Os.54264.1.S1_at--110--10371Chr01:18353574..18353598 (25 bp)
TTTTTTATGACCAGTAGCATCGGAT
LOC_Os01g32849
Os.54264.1.S1_at--896--6951Chr01:18353561..18353585 (25 bp)
GTAGCATCGGATGATCAAAGTGTCT
LOC_Os01g32849
Os.54264.1.S1_at--809--9691Chr01:18353547..18353571 (25 bp)
TCAAAGTGTCTTTTATCTCCGTTTT
LOC_Os01g32849
Os.54264.1.S1_at--771--10351Chr01:18353536..18353560 (25 bp)
TTTATCTCCGTTTTCCACATTCTCT
LOC_Os01g32849
Os.54264.1.S1_at--946--3311Chr01:18353521..18353545 (25 bp)
CACATTCTCTTGAACCCTGAGGTTT
LOC_Os01g32849
Os.54264.1.S1_at--424--10392Chr07:10934411..10934435 (25 bp)
TTTTCTGTCTAATCCTTAATTCATA
NONE
Os.54264.1.S1_at--475--8011Chr01:18353466..18353490 (25 bp)
GGAGGACCTTGTATTATTTTATCTT
LOC_Os01g32849
Target Sequence 
CTTGGGATTACATTGGCTAAGTATCATTAAGTGTTCAAAGGATCATAATATATATCTGCAACTCTACTTTATTTAAAACT
TCTAGGAGAAGTTGAGGATCACACATTCACATATAAGTGACCATTTCTTATACAAATGTAAGCACAATTTTTTTATGACC
AGTAGCATCGGATGATCAAAGTGTCTTTTATCTCCGTTTTCCACATTCTCTTGAACCCTGAGGTTTTTTTTTCTGTCTAA
TCCTTAATTCATACAAGGAGGACCTTGTATTATTTTATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54264.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis