Browse Element(s) Details


OsAffx.11289.1.S1_x_at

Description tigr:9629.m03073
TID=OsAffx.11289.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DnaJ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3287010/11Chaperone protein dnaJ 15, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32830Os.26460.1.S1_a_at11/111+18340522..18343873expressed protein
LOC_Os01g32830Os.26460.2.S1_x_at10/111+18340522..18343873expressed protein
LOC_Os01g32830Os.53828.1.S1_at1/111+18340522..18343873expressed protein
LOC_Os01g32840Os.53269.1.S1_at11/111+18348854..18351596expressed protein
LOC_Os01g32840OsAffx.21148.2.S1_at9/111+18348854..18351596expressed protein
LOC_Os01g32840OsAffx.18305.1.S1_x_at1/111+18348854..18351596expressed protein
LOC_Os01g32849Os.54264.1.S1_at11/111+18353418..18357190expressed protein
LOC_Os01g32860OsAffx.11288.1.S1_at2/111+18358262..18359463hypothetical protein
LOC_Os01g32870OsAffx.11289.1.S1_x_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870Os.14751.1.S1_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870OsAffx.11289.1.S1_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870Os.17037.3.S1_x_at1/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32880Os.2106.1.S1_a_at11/111+18378399..18381533Adaptin N terminal region family protein, expressed
LOC_Os01g32890Os.37403.1.S1_at10/111+18389098..18390821expressed protein
LOC_Os01g32900OsAffx.11290.1.S1_at11/111+18391718..18392649hypothetical protein
LOC_Os01g32910OsAffx.11291.1.S1_at11/111+18395653..18396183hypothetical protein
LOC_Os01g32920OsAffx.11292.1.S1_at11/111+18400425..18401153hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009958biological_processpositive gravitropism
GO:0008092molecular_functioncytoskeletal protein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11289.1.S1_x_at--809--7971Chr01:18374527..18374551 (25 bp)
GGATCCTGAGGCTGCATTCTTTAAA
LOC_Os01g32870
OsAffx.11289.1.S1_x_at--537--8511Chr01:18374556..18374580 (25 bp)
TGGAAGGTCTCCAGCCGTGCGAAGT
LOC_Os01g32870
OsAffx.11289.1.S1_x_at--7--5331Chr01:18374576..18374600 (25 bp)
GAAGTGTCGGCTCTCAAATCTGGAA
LOC_Os01g32870
OsAffx.11289.1.S1_x_at--1086--6451Chr01:18374698..18374722 (25 bp)
GATAATTTTTTCAAGCCAGCTAGCT
LOC_Os01g32870
OsAffx.11289.1.S1_x_at--1155--9831Chr01:18374928..18374952 (25 bp)
TAAATGGTGTGCAGGCTTTAGCGCG
LOC_Os01g32870
OsAffx.11289.1.S1_x_at--252--1651Chr01:18374947..18374971 (25 bp)
AGCGCGGTTTCAAGAAGTGACCAAC
LOC_Os01g32870
OsAffx.11289.1.S1_x_at--909--1631Chr01:18375520..18375541 (22 bp)
AGCGTCTTGCAGTCTGAACGTTGAC
LOC_Os01g32870
OsAffx.11289.1.S1_x_at--334--5451Chr01:18375532..18375556 (25 bp)
GAACGTTGACTCTGAATTGTGTGAA
LOC_Os01g32870
OsAffx.11289.1.S1_x_at--793--3171NONE
AATTGTGTGAATCCATGGTTGATGA
NONE
OsAffx.11289.1.S1_x_at--283--9231Chr01:18376587..18376611 (25 bp)
TCCTTCACGACCGAACGAACTATGG
LOC_Os01g32870
OsAffx.11289.1.S1_x_at--682--5051Chr01:18376633..18376657 (25 bp)
GCAGCAGTAGTAGATACCCCACTGA
LOC_Os01g32870
Target Sequence 
GGATCCTGAGGCTGCATTCTTTAAAAGGTTGGAAGGTCTCCAGCCGTGCGAAGTGTCGGCTCTCAAATCTGGAACTCATA
TATTTGCTGTATACGGTGATAATTTTTTCAAGCCAGCTAGCTATACAATTGAAGCAATGTGTGCAAAGAGTTACGAAGAC
ACAACACAGAGGCTAAAGGAAATAGAGTCTAAAATTCTAGAGAAGAGAAATGATTTGCGCCAATTTGAAACTGAGTACAG
AAAAAGAGCTTTGATCGAGTTAAATGGTGTGCAGGCTTTAGCGCGGTTTCAAGAAGTGACCAACAGATACACCCAAGAAA
AAGAAGCGTCTTGCAGTCTGAACGTTGACTCTGAATTGTGTGAATCCATGGTTGATGATATGCTGAGAGAAAGGGATGAC
ATCCACTCCTCCTTCACGACCGAACGAACTATGGTGAACTCTGTTGGAGCTGGTAGCAGCAGTAGTAGATACCCCACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11289.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis