Browse Element(s) Details


Os.2106.1.S1_a_at

Description gb:AK070837.1
DB_XREF= gi:32980860
TID=Os.2106.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.2106 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative adaptin (OSJNBa0054L14.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075L04, full insert sequence.
FL= gb:AK070837.1 gb:AK107048.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3288011/11Adaptin N terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32849Os.54264.1.S1_at11/111+18353418..18357190expressed protein
LOC_Os01g32860OsAffx.11288.1.S1_at2/111+18358262..18359463hypothetical protein
LOC_Os01g32870OsAffx.11289.1.S1_x_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870Os.14751.1.S1_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870OsAffx.11289.1.S1_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870Os.17037.3.S1_x_at1/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32880Os.2106.1.S1_a_at11/111+18378399..18381533Adaptin N terminal region family protein, expressed
LOC_Os01g32890Os.37403.1.S1_at10/111+18389098..18390821expressed protein
LOC_Os01g32900OsAffx.11290.1.S1_at11/111+18391718..18392649hypothetical protein
LOC_Os01g32910OsAffx.11291.1.S1_at11/111+18395653..18396183hypothetical protein
LOC_Os01g32920OsAffx.11292.1.S1_at11/111+18400425..18401153hypothetical protein
LOC_Os01g32930OsAffx.23479.1.S1_at11/111+18404310..18405031SGS domain containing protein, expressed
LOC_Os01g32940Os.11380.1.S1_x_at1/111+18406274..18407146hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0030276molecular_functionclathrin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2106.1.S1_a_at--607--8531Chr01:18381034..18381058 (25 bp)
TGGACTCTGGTGAATCTAGTTCTCA
LOC_Os01g32880
Os.2106.1.S1_a_at--151--6351Chr01:18381075..18381099 (25 bp)
GATGCTGATTTCGTAGGCCATCCCA
LOC_Os01g32880
Os.2106.1.S1_a_at--1008--2931Chr01:18381236..18381260 (25 bp)
AAGGCATTGCACTCAACCTGATGTA
LOC_Os01g32880
Os.2106.1.S1_a_at--902--8751Chr01:18381257..18381281 (25 bp)
TGTACCTCAAGCTCCTATAATCCAG
LOC_Os01g32880
Os.2106.1.S1_a_at--557--10551Chr01:18381289..18381313 (25 bp)
TTCTATAGTTGCTGAGGACTCCCTT
LOC_Os01g32880
Os.2106.1.S1_a_at--112--6191Chr01:18381302..18381326 (25 bp)
GAGGACTCCCTTGTTTTTGATACAT
LOC_Os01g32880
Os.2106.1.S1_a_at--948--3571Chr01:18381364..18381388 (25 bp)
CATTCAGCGGTTTTTAGTTTTCACT
LOC_Os01g32880
Os.2106.1.S1_a_at--398--6811Chr01:18381415..18381439 (25 bp)
GTTTATCTGTGGCAGCTGGTCTAAC
LOC_Os01g32880
Os.2106.1.S1_a_at--473--1991Chr01:18381438..18381462 (25 bp)
ACTGCCACTGTTGTATCCTGTATAT
LOC_Os01g32880
Os.2106.1.S1_a_at--252--5931Chr01:18381470..18381494 (25 bp)
GAGCATAGCACTTGATGTTCTTCAT
LOC_Os01g32880
Os.2106.1.S1_a_at--886--8791Chr01:18381485..18381509 (25 bp)
TGTTCTTCATAGCTCCATGGCAATA
LOC_Os01g32880
Target Sequence 
TGGACTCTGGTGAATCTAGTTCTCAGTGGAAAAATAATGTAGATGCTGATTTCGTAGGCCATCCCACTTCAAGTTCTAGA
CCAAGTATTCAACAGAGCCATGATAAAGAGAGTACAAACCCTCTTGAAAGTGATGGGAAGGAAGCGAGAAAACACAGAAG
ATCTAGGAGTGGGCATCGTCAAGGAAAACATAAGCATAGAGAAAGGCATTGCACTCAACCTGATGTACCTCAAGCTCCTA
TAATCCAGGATTTTCTTCTATAGTTGCTGAGGACTCCCTTGTTTTTGATACATTTCTATTGCCAAGTACATGTTACCTTT
TGTTCATTCACATTCAGCGGTTTTTAGTTTTCACTTTCATTTCATGGAAGTTATTTAGTTGGTTTATCTGTGGCAGCTGG
TCTAACTGCCACTGTTGTATCCTGTATATCTTTCTTGAGCATAGCACTTGATGTTCTTCATAGCTCCATGGCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2106.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis