Browse Element(s) Details


OsAffx.23479.1.S1_at

Description tigr:9629.m03079
TID=OsAffx.23479.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Sgt1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3293011/11SGS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32880Os.2106.1.S1_a_at11/111+18378399..18381533Adaptin N terminal region family protein, expressed
LOC_Os01g32890Os.37403.1.S1_at10/111+18389098..18390821expressed protein
LOC_Os01g32900OsAffx.11290.1.S1_at11/111+18391718..18392649hypothetical protein
LOC_Os01g32910OsAffx.11291.1.S1_at11/111+18395653..18396183hypothetical protein
LOC_Os01g32920OsAffx.11292.1.S1_at11/111+18400425..18401153hypothetical protein
LOC_Os01g32930OsAffx.23479.1.S1_at11/111+18404310..18405031SGS domain containing protein, expressed
LOC_Os01g32940Os.11380.1.S1_x_at1/111+18406274..18407146hypothetical protein
LOC_Os01g32950OsAffx.23481.1.S1_at11/111+18407869..18408138hypothetical protein
LOC_Os01g32964Os.37337.1.S1_a_at10/111+18414449..18422030Protein phosphatase 2C containing protein, expressed
LOC_Os01g32980OsAffx.23482.1.S1_x_at11/111+18428412..18438194Mitochondrial carrier protein, expressed
LOC_Os01g32980OsAffx.23482.1.S1_at11/111+18428412..18438194Mitochondrial carrier protein, expressed
LOC_Os01g32980OsAffx.23482.2.S1_at11/111+18428412..18438194Mitochondrial carrier protein, expressed
LOC_Os01g32980Os.25330.2.S1_at1/111+18428412..18438194Mitochondrial carrier protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009734biological_processauxin mediated signaling pathway
GO:0030163biological_processprotein catabolism
GO:0042831biological_processdefense response to pathogenic fungi
GO:0019005cellular_componentSCF ubiquitin ligase complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23479.1.S1_at--1118--4071Chr01:18404437..18404461 (25 bp)
CGAGCTCCGGGAAGCCCAAGTACAA
LOC_Os01g32930
OsAffx.23479.1.S1_at--669--1911Chr01:18404530..18404554 (25 bp)
ACGTGTCCGTGGACTTCGGCGAGCA
LOC_Os01g32930
OsAffx.23479.1.S1_at--59--4611Chr01:18404548..18404572 (25 bp)
GCGAGCAGATGCTGAGCGTCTCCGT
LOC_Os01g32930
OsAffx.23479.1.S1_at--866--1531Chr01:18404651..18404675 (25 bp)
AGCATCCTCCCATCGAAGATCGAGG
LOC_Os01g32930
OsAffx.23479.1.S1_at--495--5351Chr01:18404665..18404689 (25 bp)
GAAGATCGAGGTGCGTCTCGCCAAG
LOC_Os01g32930
OsAffx.23479.1.S1_at--133--2111Chr01:18404705..18404729 (25 bp)
ACATGGACGTCGCTGGAGTACACGA
LOC_Os01g32930
OsAffx.23479.1.S1_at--669--6091Chr01:18404720..18404744 (25 bp)
GAGTACACGAGCAAGGCCAACAACA
LOC_Os01g32930
OsAffx.23479.1.S1_at--809--7891Chr01:18404865..18404889 (25 bp)
GGTTCTTCCAGCAGATGTACGGCAA
LOC_Os01g32930
OsAffx.23479.1.S1_at--1147--8371Chr01:18404907..18404931 (25 bp)
GGCGAGCCATCATGAAGTCCTACGT
LOC_Os01g32930
OsAffx.23479.1.S1_at--86--8551Chr01:18404931..18404955 (25 bp)
TGGAGTCCTACGTGCTGTCCACGGA
LOC_Os01g32930
OsAffx.23479.1.S1_at--782--5011Chr01:18404959..18404983 (25 bp)
GAAGGACGTCGGCTCTAAGAAGATT
LOC_Os01g32930
Target Sequence 
CGAGCTCCGGGAAGCCCAAGTACAAGCACGACTTCTACAACGGCGCGAGCGAGGTGGTGGTGACGGTGTTCGCCAAGAGC
GTGGCGGCGGAGCACGTGTCCGTGGACTTCGGCGAGCAGATGCTGAGCGTCTCCGTCGAGGTCGTCCCGGCCAAGTGCCG
CTACAGCATCCTCCCATCGAAGATCGAGGTGCGTCTCGCCAAGGCGGATGAGCAAGTGACATGGACGTCGCTGGAGTACA
CGAGCAAGGCCAACAACAAGCTCGCGGCGACGGCGACGACAACGACGAGGAAGAAGGTAGACTGGGACAAGCTGGAAGCC
GAGGTGAAGAAGGAGGAGGAGGAGGAGGAGGTGGACACGGCGACGCCGGTGGTGAACAGGTTCTTCCAGCAGATGTACGG
CAACGGCGACGAGGACATGCGGCGAGCCATCATGAAGTCCTACGTGGAGTCCTACGTGCTGTCCACGGACTGGAAGGACG
TCGGCTCTAAGAAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23479.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis