Browse Element(s) Details


Os.37337.1.S1_a_at

Description gb:AK059183.1
DB_XREF= gi:32969201
TID=Os.37337.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37337 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0054L14.21 (OSJNBa0054L14.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-023-G06, full insert sequence.
FL= gb:AK059183.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3296410/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32890Os.37403.1.S1_at10/111+18389098..18390821expressed protein
LOC_Os01g32900OsAffx.11290.1.S1_at11/111+18391718..18392649hypothetical protein
LOC_Os01g32910OsAffx.11291.1.S1_at11/111+18395653..18396183hypothetical protein
LOC_Os01g32920OsAffx.11292.1.S1_at11/111+18400425..18401153hypothetical protein
LOC_Os01g32930OsAffx.23479.1.S1_at11/111+18404310..18405031SGS domain containing protein, expressed
LOC_Os01g32940Os.11380.1.S1_x_at1/111+18406274..18407146hypothetical protein
LOC_Os01g32950OsAffx.23481.1.S1_at11/111+18407869..18408138hypothetical protein
LOC_Os01g32964Os.37337.1.S1_a_at10/111+18414449..18422030Protein phosphatase 2C containing protein, expressed
LOC_Os01g32980OsAffx.23482.1.S1_x_at11/111+18428412..18438194Mitochondrial carrier protein, expressed
LOC_Os01g32980OsAffx.23482.1.S1_at11/111+18428412..18438194Mitochondrial carrier protein, expressed
LOC_Os01g32980OsAffx.23482.2.S1_at11/111+18428412..18438194Mitochondrial carrier protein, expressed
LOC_Os01g32980Os.25330.2.S1_at1/111+18428412..18438194Mitochondrial carrier protein, expressed
LOC_Os01g32990NANA1+18443658..18447995retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37337.1.S1_a_at--205--10531NONE
TTCAGCAATGCTATCAGAGAGGTTA
NONE
Os.37337.1.S1_a_at--250--10431Chr01:18414992..18415016 (25 bp)
TTAGGCAATGACTCAAGTGGTCGGA
LOC_Os01g32964
Os.37337.1.S1_a_at--1114--9431Chr01:18414972..18414996 (25 bp)
TCGGAGAACATCATCAAGCTTGTTT
LOC_Os01g32964
Os.37337.1.S1_a_at--548--1551Chr01:18414956..18414980 (25 bp)
AGCTTGTTTACATGTGCCATCTGCC
LOC_Os01g32964
Os.37337.1.S1_a_at--60--9491Chr01:18414937..18414961 (25 bp)
TCTGCCAGGTGGACCTTGAACCAAG
LOC_Os01g32964
Os.37337.1.S1_a_at--297--2911Chr01:18414910..18414934 (25 bp)
AAGGTATATCAGTCCATGCTGGTTC
LOC_Os01g32964
Os.37337.1.S1_a_at--906--611Chr01:18414895..18414919 (25 bp)
ATGCTGGTTCAATCTTCTCTTCCAG
LOC_Os01g32964
Os.37337.1.S1_a_at--1025--9211Chr01:18414875..18414899 (25 bp)
TCCAGCTCCTCTAAGCCATGGGAAG
LOC_Os01g32964
Os.37337.1.S1_a_at--802--10251Chr01:18414841..18414865 (25 bp)
TTTGTTCCGATTGCCGCGACAAGAA
LOC_Os01g32964
Os.37337.1.S1_a_at--932--71Chr01:18414832..18414856 (25 bp)
ATTGCCGCGACAAGAAGGATGCCAT
LOC_Os01g32964
Os.37337.1.S1_a_at--103--4091Chr01:18414797..18414821 (25 bp)
CGACCAAGTGGCGTCAAGGTTCTAT
LOC_Os01g32964
Target Sequence 
TTCAGCAATGCTATCAGAGAGGTTAGGCAATGACTCAAGTGGTCGGAGAACATCATCAAGCTTGTTTACATGTGCCATCT
GCCAGGTGGACCTTGAACCAAGTGAAGGTATATCAGTCCATGCTGGTTCAATCTTCTCTTCCAGCTCCTCTAAGCCATGG
GAAGGCCCNTTCCTTTGTTCCGATTGCCGCGACAAGAAGGATGCCATGGAAGGTAAACGACCAAGTGGCGTCAAGGTTCT
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37337.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis