Browse Element(s) Details


OsAffx.23482.1.S1_x_at

Description gb:NM_193782.1
DB_XREF= gi:34914647
GEN=OSJNBa0054L14.23
TID=OsAffx.23482.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0054L14.23 (OSJNBa0054L14.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3298011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32930OsAffx.23479.1.S1_at11/111+18404310..18405031SGS domain containing protein, expressed
LOC_Os01g32940Os.11380.1.S1_x_at1/111+18406274..18407146hypothetical protein
LOC_Os01g32950OsAffx.23481.1.S1_at11/111+18407869..18408138hypothetical protein
LOC_Os01g32964Os.37337.1.S1_a_at10/111+18414449..18422030Protein phosphatase 2C containing protein, expressed
LOC_Os01g32980OsAffx.23482.1.S1_x_at11/111+18428412..18438194Mitochondrial carrier protein, expressed
LOC_Os01g32980OsAffx.23482.1.S1_at11/111+18428412..18438194Mitochondrial carrier protein, expressed
LOC_Os01g32980OsAffx.23482.2.S1_at11/111+18428412..18438194Mitochondrial carrier protein, expressed
LOC_Os01g32980Os.25330.2.S1_at1/111+18428412..18438194Mitochondrial carrier protein, expressed
LOC_Os01g32990NANA1+18443658..18447995retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g33000Os.2117.1.S1_s_at11/111+18451780..18455740expressed protein
LOC_Os01g33000Os.2117.1.S1_at11/111+18451780..18455740expressed protein
LOC_Os01g33000Os.2117.2.S1_x_at10/111+18451780..18455740expressed protein
LOC_Os01g33000Os.2117.2.S1_at3/111+18451780..18455740expressed protein
LOC_Os01g33009Os.25448.1.A1_at4/111+18457438..18457945NA
LOC_Os01g33009OsAffx.27522.1.S1_x_at2/111+18457438..18457945NA
LOC_Os01g33020Os.2118.1.S1_at9/111+18462138..18465157Sybindin-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23482.1.S1_x_at--383--231Chr01:18432204..18432228 (25 bp)
ATATTCTAGCTGCTTCATGTGCCGG
LOC_Os01g32980
OsAffx.23482.1.S1_x_at--404--771Chr01:18432188..18432212 (25 bp)
ATGTGCCGGGATTGCAACAGCTGTT
LOC_Os01g32980
OsAffx.23482.1.S1_x_at--918--1531Chr01:18430029..18430053 (25 bp)
AGCATTTGGTCTGCTTTACGGCGGA
LOC_Os01g32980
OsAffx.23482.1.S1_x_at--782--6591Chr01:18429874..18430004 (25 bp)
GATTGTATAGTGGTCTTCTTCCTTC
LOC_Os01g32980
OsAffx.23482.1.S1_x_at--839--7671Chr01:18429841..18429865 (25 bp)
GGGTTACTCATGTGGCCATCCAGCT
LOC_Os01g32980
OsAffx.23482.1.S1_x_at--916--2011Chr01:18429680..18429704 (25 bp)
ACTACAGTCGATAAGCTCAGCCCAG
LOC_Os01g32980
OsAffx.23482.1.S1_x_at--594--2451Chr01:18429081..18429105 (25 bp)
AACAAGGTCGTGCTCGTCATGGTGC
LOC_Os01g32980
OsAffx.23482.1.S1_x_at--857--7291Chr01:18429060..18429084 (25 bp)
GTGCTGTGCACTACACCGGTGTAAT
LOC_Os01g32980
OsAffx.23482.1.S1_x_at--325--5211Chr01:18429003..18429027 (25 bp)
GAATTCCCGGCTTCTACAGAGGTTG
LOC_Os01g32980
OsAffx.23482.1.S1_x_at--362--10231Chr01:18428969..18428993 (25 bp)
TTTGCTAAGGACAACCCCGAATGCT
LOC_Os01g32980
OsAffx.23482.1.S1_x_at--500--5271Chr01:18428951..18428975 (25 bp)
GAATGCTGTCATTACGTTCACCAGT
LOC_Os01g32980
Target Sequence 
ATATTCTAGCTGCTTCATGTGCCGGGATTGCAACAGCTGTTGCAACTAATCCATTGTGGGTTGTGAAGACTAGGCTACAA
ACACAAGGGATGAGGACAGGTGTGGTACCTTACACAAGCATTTGGTCTGCTTTACGGCGGATTGCAGAAGAAGAAGGTAT
CCGTGGATTGTATAGTGGTCTTCTTCCTTCTCTAGCTGGGGTTACTCATGTGGCCATCCAGCTCCCAGTCTACGAGAATG
TGAAGCTTTACTTTGCTAAAAGAGACAACACTACAGTCGATAAGCTCAGCCCAGGAAAATTAGCTATTTGTTCATCAGGA
TCTAAAGTAGCGGCCTCAATAATAACATACCCCCATGAGGTTGTACGATCTAAATTGCAAGAACAAGGTCGTGCTCGTCA
TGGTGCTGTGCACTACACCGGTGTAATCGACTGTATCAAGCAAGTGTATCAGAAGGAGGGAATTCCCGGCTTCTACAGAG
GTTGTGCTACGAATTTGCTAAGGACAACCCCGAATGCTGTCATTACGTTCACCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23482.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis