Browse Element(s) Details


Os.25448.1.A1_at

Description gb:AK108600.1
DB_XREF= gi:32993809
TID=Os.25448.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.25448 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-E09, full insert sequence.
FL= gb:AK108600.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g330094/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32980OsAffx.23482.1.S1_x_at11/111+18428412..18438194Mitochondrial carrier protein, expressed
LOC_Os01g32980OsAffx.23482.1.S1_at11/111+18428412..18438194Mitochondrial carrier protein, expressed
LOC_Os01g32980OsAffx.23482.2.S1_at11/111+18428412..18438194Mitochondrial carrier protein, expressed
LOC_Os01g32980Os.25330.2.S1_at1/111+18428412..18438194Mitochondrial carrier protein, expressed
LOC_Os01g32990NANA1+18443658..18447995retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g33000Os.2117.1.S1_s_at11/111+18451780..18455740expressed protein
LOC_Os01g33000Os.2117.1.S1_at11/111+18451780..18455740expressed protein
LOC_Os01g33000Os.2117.2.S1_x_at10/111+18451780..18455740expressed protein
LOC_Os01g33000Os.2117.2.S1_at3/111+18451780..18455740expressed protein
LOC_Os01g33009Os.25448.1.A1_at4/111+18457438..18457945NA
LOC_Os01g33009OsAffx.27522.1.S1_x_at2/111+18457438..18457945NA
LOC_Os01g33020Os.2118.1.S1_at9/111+18462138..18465157Sybindin-like family protein, expressed
LOC_Os01g33030Os.4676.1.S1_at10/111+18467618..18469727Brix domain containing protein, expressed
LOC_Os01g33040Os.32739.1.S1_at11/111+18477785..18484690kinesin heavy chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25448.1.A1_at--419--5592Chr04:10445098..10445122 (25 bp)
GAAATTGACACACCGGTGCCAGTTC
NONE
Os.25448.1.A1_at--186--494Chr05:19111794..19112133 (25 bp)
ATCTGTGACGGGTTTTATACTTTAG
NONE
Os.25448.1.A1_at--778--3432Chr04:10445249..10445273 (25 bp)
CAGATCAATCTGCACATATTTGTTT
NONE
Os.25448.1.A1_at--497--92Chr04:10445280..10445304 (25 bp)
ATTCCATCTAATTTGTAACTGCTTT
NONE
Os.25448.1.A1_at--448--9792Chr04:10445391..10445415 (25 bp)
TAAGCTTTCAGGTGCCATGATCCCA
NONE
Os.25448.1.A1_at--526--1112Chr04:10445476..10445500 (25 bp)
AGTGATCCGGATGTCAAGTGCCCAA
NONE
Os.25448.1.A1_at--1064--2852Chr04:10445491..10445515 (25 bp)
AAGTGCCCAACTCCTATGTATGCTT
NONE
Os.25448.1.A1_at--102--10132Chr04:10445505..10445529 (25 bp)
TATGTATGCTTGATGCTTCCCTCAA
NONE
Os.25448.1.A1_at--892--632Chr04:10445517..10445541 (25 bp)
ATGCTTCCCTCAATGCTCATATATA
NONE
Os.25448.1.A1_at--759--6532Chr04:10445560..10445584 (25 bp)
GATTTTGAACCATCCACATTAGGTG
NONE
Os.25448.1.A1_at--573--5051Chr01:18457140..18457164 (25 bp)
GCAGCAATCCATGATCTGGAAGCAT
NONE
Target Sequence 
GAAATTGACACACCGGTGCCAGTTCATTAAAAAGAAAAAAAAATCTGTGACGGGTTTTATACTTTAGATCTTTTTCTGTT
GCAGATGAGCTGAAAAACTCTTAAAATTGGATAGCTCAAATATATGTAATATGTAATTGTATTTCTAAAGCTAGAGCCAG
ATCAATCTGCACATATTTGTTTTATGCTATTCCATCTAATTTGTAACTGCTTTTGTTTCATGTCATATATGCAGTTGGTA
AGGTGGTATACAATTTGAGCTATGATATTTCAGACAGACTGAGGGCATATAGAAAGTTAAGCTTTCAGGTGCCATGATCC
CATTCGCTTTTCAATTGATTAAATGGAATTATTTTGTTGGTAATCTCTTAACAAATACTATGAGTGATCCGGATGTCAAG
TGCCCAACTCCTATGTATGCTTGATGCTTCCCTCAATGCTCATATATATAATTGGGTCATCTTTTAGATTTTGAACCATC
CACATTAGGTGAAGGTTTATTTTTGCTAAGGTATGCAGCAATCCATGATCTGGAAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25448.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis