Browse Element(s) Details


Os.2117.2.S1_at

Description gb:NM_193785.1
DB_XREF= gi:34914653
GEN=P0504D03.18
TID=Os.2117.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.2117 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0504D03.18 (P0504D03.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0504D03.18 (P0504D03.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g330003/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32980OsAffx.23482.1.S1_x_at11/111+18428412..18438194Mitochondrial carrier protein, expressed
LOC_Os01g32980OsAffx.23482.1.S1_at11/111+18428412..18438194Mitochondrial carrier protein, expressed
LOC_Os01g32980OsAffx.23482.2.S1_at11/111+18428412..18438194Mitochondrial carrier protein, expressed
LOC_Os01g32980Os.25330.2.S1_at1/111+18428412..18438194Mitochondrial carrier protein, expressed
LOC_Os01g32990NANA1+18443658..18447995retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g33000Os.2117.1.S1_s_at11/111+18451780..18455740expressed protein
LOC_Os01g33000Os.2117.1.S1_at11/111+18451780..18455740expressed protein
LOC_Os01g33000Os.2117.2.S1_x_at10/111+18451780..18455740expressed protein
LOC_Os01g33000Os.2117.2.S1_at3/111+18451780..18455740expressed protein
LOC_Os01g33009Os.25448.1.A1_at4/111+18457438..18457945NA
LOC_Os01g33009OsAffx.27522.1.S1_x_at2/111+18457438..18457945NA
LOC_Os01g33020Os.2118.1.S1_at9/111+18462138..18465157Sybindin-like family protein, expressed
LOC_Os01g33030Os.4676.1.S1_at10/111+18467618..18469727Brix domain containing protein, expressed
LOC_Os01g33040Os.32739.1.S1_at11/111+18477785..18484690kinesin heavy chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2117.2.S1_at--633--831NONE
ATGGAGACCCCGCAGAAGGCTTCTC
NONE
Os.2117.2.S1_at--764--8531NONE
TGGAGACCCCGCAGAAGGCTTCTCA
NONE
Os.2117.2.S1_at--868--8051NONE
GGAGACCCCGCAGAAGGCTTCTCAA
NONE
Os.2117.2.S1_at--762--5991NONE
GAGACCCCGCAGAAGGCTTCTCAAG
NONE
Os.2117.2.S1_at--583--1391NONE
AGACCCCGCAGAAGGCTTCTCAAGT
NONE
Os.2117.2.S1_at--1140--4311Chr01:18453890..18453910 (21 bp)
CCATTGACTGATAAGGCAAGAATTT
LOC_Os01g33000
Os.2117.2.S1_at--1118--31Chr01:18453892..18453982 (25 bp)
ATTGACTGATAAGGCAAGAATTTCC
LOC_Os01g33000
Os.2117.2.S1_at--907--3851NONE
CTGATAAGGCAAGAATTTCCAGTCT
NONE
Os.2117.2.S1_at--147--6471NONE
GATAAGGCAAGAATTTCCAGTCTTT
NONE
Os.2117.2.S1_at--706--351NONE
ATAAGGCAAGAATTTCCAGTCTTTC
NONE
Os.2117.2.S1_at--831--9751Chr01:18453901..18453991 (25 bp)
TAAGGCAAGAATTTCCAGTCTTTCA
LOC_Os01g33000
Target Sequence 
ATGGAGACCCCGCAGAAGGCTTCTCAAGTGATGATGGTGAATCAGGAGATTTGCATGGCCGCTTGCTCTTTCAATACCTT
GAGTTTGATTCTCCATTTTGTCGTGAACCATTGACTGATAAGGCAAGAATTTCCAGTCTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2117.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis