Browse Element(s) Details


Os.14751.1.S1_at

Description gb:AK111736.1
DB_XREF= gi:37988399
TID=Os.14751.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14751 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ARG1 protein (Altered Response to Gravity) (OSJNBa0054L14.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023047L09, full insert sequence.
FL= gb:AK111736.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3287010/11Chaperone protein dnaJ 15, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32830Os.26460.1.S1_a_at11/111+18340522..18343873expressed protein
LOC_Os01g32830Os.26460.2.S1_x_at10/111+18340522..18343873expressed protein
LOC_Os01g32830Os.53828.1.S1_at1/111+18340522..18343873expressed protein
LOC_Os01g32840Os.53269.1.S1_at11/111+18348854..18351596expressed protein
LOC_Os01g32840OsAffx.21148.2.S1_at9/111+18348854..18351596expressed protein
LOC_Os01g32840OsAffx.18305.1.S1_x_at1/111+18348854..18351596expressed protein
LOC_Os01g32849Os.54264.1.S1_at11/111+18353418..18357190expressed protein
LOC_Os01g32860OsAffx.11288.1.S1_at2/111+18358262..18359463hypothetical protein
LOC_Os01g32870OsAffx.11289.1.S1_x_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870Os.14751.1.S1_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870OsAffx.11289.1.S1_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870Os.17037.3.S1_x_at1/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32880Os.2106.1.S1_a_at11/111+18378399..18381533Adaptin N terminal region family protein, expressed
LOC_Os01g32890Os.37403.1.S1_at10/111+18389098..18390821expressed protein
LOC_Os01g32900OsAffx.11290.1.S1_at11/111+18391718..18392649hypothetical protein
LOC_Os01g32910OsAffx.11291.1.S1_at11/111+18395653..18396183hypothetical protein
LOC_Os01g32920OsAffx.11292.1.S1_at11/111+18400425..18401153hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009958biological_processpositive gravitropism
GO:0008092molecular_functioncytoskeletal protein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14751.1.S1_at--751--6951Chr01:18376851..18376875 (25 bp)
GTAGCATTAGAAGTTTTGGACACAG
LOC_Os01g32870
Os.14751.1.S1_at--638--5571Chr01:18376875..18376899 (25 bp)
GAAAGTCATGTATTATCCTTCTTTA
LOC_Os01g32870
Os.14751.1.S1_at--824--3871Chr01:18376912..18376936 (25 bp)
CTGTCTTACTTTTCTTCCACTATCT
LOC_Os01g32870
Os.14751.1.S1_at--869--9871Chr01:18376918..18376942 (25 bp)
TACTTTTCTTCCACTATCTCGTCTT
LOC_Os01g32870
Os.14751.1.S1_at--900--10671Chr01:18376941..18376965 (25 bp)
TTCCTCTTGCTCTTTTACCTCTGTT
LOC_Os01g32870
Os.14751.1.S1_at--516--3771Chr01:18376959..18376983 (25 bp)
CTCTGTTGCCGGTCGAGAAATTGCT
LOC_Os01g32870
Os.14751.1.S1_at--817--4811Chr01:18376981..18377005 (25 bp)
GCTAAGGTAATTCGCACTGGTGTTG
LOC_Os01g32870
Os.14751.1.S1_at--249--2551Chr01:18377014..18377038 (25 bp)
AACTCGAGTAGGTTCTTTATTGCAA
LOC_Os01g32870
Os.14751.1.S1_at--555--6931Chr01:18377021..18377045 (25 bp)
GTAGGTTCTTTATTGCAATTGTTGA
LOC_Os01g32870
Os.14751.1.S1_at--711--10411NONE
TTATTTGTTTATGTTCGGTGCTAAT
NONE
Os.14751.1.S1_at--1003--6711Chr01:18377059..18377082 (24 bp)
GTTCGGTGCTAATTATCCCATTTCA
LOC_Os01g32870
Target Sequence 
GTAGCATTAGAAGTTTTGGACACAGAAAGTCATGTATTATCCTTCTTTAAATTCCATGTTCCTGTCTTACTTTTCTTCCA
CTATCTCGTCTTCCTCTTGCTCTTTTACCTCTGTTGCCGGTCGAGAAATTGCTAAGGTAATTCGCACTGGTGTTGGAAGT
GGGAACTCGAGTAGGTTCTTTATTGCAATTGTTGATTATTTGTTTATGTTCGGTGCTAATTATCCCATTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14751.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis