Browse Element(s) Details


Os.26460.1.S1_a_at

Description gb:AK072161.1
DB_XREF= gi:32982184
TID=Os.26460.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.26460 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0520B06.24 (P0520B06.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013132P06, full insert sequence.
FL= gb:AK072161.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3283011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32780Os.7535.1.S1_at11/111+18317674..18320608universal stress protein family protein, expressed
LOC_Os01g32790Os.13027.1.S1_at9/111+18321451..18324615expressed protein
LOC_Os01g32800Os.22605.1.S1_at11/111+18326150..18329709PCI domain containing protein, expressed
LOC_Os01g32810OsAffx.21149.1.S1_x_at7/111+18331624..18331974hypothetical protein
LOC_Os01g32830Os.26460.1.S1_a_at11/111+18340522..18343873expressed protein
LOC_Os01g32830Os.26460.2.S1_x_at10/111+18340522..18343873expressed protein
LOC_Os01g32830Os.53828.1.S1_at1/111+18340522..18343873expressed protein
LOC_Os01g32840Os.53269.1.S1_at11/111+18348854..18351596expressed protein
LOC_Os01g32840OsAffx.21148.2.S1_at9/111+18348854..18351596expressed protein
LOC_Os01g32840OsAffx.18305.1.S1_x_at1/111+18348854..18351596expressed protein
LOC_Os01g32849Os.54264.1.S1_at11/111+18353418..18357190expressed protein
LOC_Os01g32860OsAffx.11288.1.S1_at2/111+18358262..18359463hypothetical protein
LOC_Os01g32870OsAffx.11289.1.S1_x_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870Os.14751.1.S1_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870OsAffx.11289.1.S1_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870Os.17037.3.S1_x_at1/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26460.1.S1_a_at--956--6491Chr01:18341501..18341525 (25 bp)
GATAGGGCTAGAGCCTTCACTGACC
LOC_Os01g32830
Os.26460.1.S1_a_at--477--5871Chr01:18341491..18341515 (25 bp)
GAGCCTTCACTGACCATATCAATAT
LOC_Os01g32830
Os.26460.1.S1_a_at--361--9891Chr01:18341469..18341493 (25 bp)
TATTACCGAGGTGCATAACCGTGGC
LOC_Os01g32830
Os.26460.1.S1_a_at--480--351Chr01:18341455..18341479 (25 bp)
ATAACCGTGGCGTTGGCTCTGAGCA
LOC_Os01g32830
Os.26460.1.S1_a_at--643--3771Chr01:18341439..18341463 (25 bp)
CTCTGAGCATCGTGTCTTTCTTTGA
LOC_Os01g32830
Os.26460.1.S1_a_at--73--7431Chr01:18341270..18341294 (25 bp)
GTGTAAATTCTTCGCTAACCGCTGC
LOC_Os01g32830
Os.26460.1.S1_a_at--845--3751Chr01:18340818..18340842 (25 bp)
CTCATGGACTGGGAACAGCAGCGCT
LOC_Os01g32830
Os.26460.1.S1_a_at--293--2151Chr01:18340804..18340828 (25 bp)
ACAGCAGCGCTGTCGGCCAAGGAGC
LOC_Os01g32830
Os.26460.1.S1_a_at--85--7671Chr01:18340738..18340762 (25 bp)
GGGATCTTCGGTTCGCTCATTTGCT
LOC_Os01g32830
Os.26460.1.S1_a_at--1043--9591Chr01:18340722..18340746 (25 bp)
TCATTTGCTCGGTTCCGGCCGTCAG
LOC_Os01g32830
Os.26460.1.S1_a_at--568--8411Chr01:18340706..18340730 (25 bp)
GGCCGTCAGGCAGAGCTTAGTGTTC
LOC_Os01g32830
Target Sequence 
GATAGGGCTAGAGCCTTCACTGACCATATCAATATTACCGAGGTGCATAACCGTGGCGTTGGCTCTGAGCATCGTGTCTT
TCTTTGAAGGTGTAAATTCTTCGCTAACCGCTGCGGTCGTCGTCCTCACCGGGCTGATCGGCGCAAATTTTGTGCAAGCA
GCCATGGACAAGCTTGGCCTCAACGACCCCATCGCGCGAGGAATAGGGACGGCTTCCAGTGCTCATGGACTGGGAACAGC
AGCGCTGTCGGCCAAGGAGCCTGAAGCGCTGCCCTTCTGCGCCATCGCTTACGGCCTGACGGGGATCTTCGGTTCGCTCA
TTTGCTCGGTTCCGGCCGTCAGGCAGAGCTTAGTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26460.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis