Browse Element(s) Details


Os.7535.1.S1_at

Description gb:AK070914.1
DB_XREF= gi:32980937
TID=Os.7535.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7535 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0520B06.18 (P0520B06.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023069J05, full insert sequence.
FL= gb:AK070914.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3278011/11universal stress protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32750Os.11636.1.S1_at11/111+18287711..18295390TATA box-binding protein-associated factor, putative, expressed
LOC_Os01g32760NANA1+18296539..18298530hypothetical protein
LOC_Os01g32770Os.22577.2.S1_x_at11/111+18302726..18304161expressed protein
LOC_Os01g32770Os.22577.1.S1_x_at11/111+18302726..18304161expressed protein
LOC_Os01g32780Os.7535.1.S1_at11/111+18317674..18320608universal stress protein family protein, expressed
LOC_Os01g32790Os.13027.1.S1_at9/111+18321451..18324615expressed protein
LOC_Os01g32800Os.22605.1.S1_at11/111+18326150..18329709PCI domain containing protein, expressed
LOC_Os01g32810OsAffx.21149.1.S1_x_at7/111+18331624..18331974hypothetical protein
LOC_Os01g32830Os.26460.1.S1_a_at11/111+18340522..18343873expressed protein
LOC_Os01g32830Os.26460.2.S1_x_at10/111+18340522..18343873expressed protein
LOC_Os01g32830Os.53828.1.S1_at1/111+18340522..18343873expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7535.1.S1_at--772--6531Chr01:18319168..18319192 (25 bp)
GATTTACTGATCGTTGGGAGTCACA
LOC_Os01g32780
Os.7535.1.S1_at--859--10831Chr01:18319155..18319179 (25 bp)
TTGGGAGTCACAGCCGTGGACCTGT
LOC_Os01g32780
Os.7535.1.S1_at--919--6911Chr01:18318001..18318025 (25 bp)
GTATGCATCATTCGAAGTGCCCAGT
LOC_Os01g32780
Os.7535.1.S1_at--840--4111Chr01:18317989..18318013 (25 bp)
CGAAGTGCCCAGTTCTTGTTGTGAA
LOC_Os01g32780
Os.7535.1.S1_at--994--7031Chr01:18317955..18317979 (25 bp)
GTAAATAAGCTTTCCGAATCTCAAT
LOC_Os01g32780
Os.7535.1.S1_at--744--10231Chr01:18317917..18317941 (25 bp)
TATTGTCGATGTGTTATCCTCAACA
LOC_Os01g32780
Os.7535.1.S1_at--1007--2251Chr01:18317810..18317834 (25 bp)
AAATATCCGCTTCTTGTTGCTGTAA
LOC_Os01g32780
Os.7535.1.S1_at--981--7511Chr01:18317780..18317804 (25 bp)
GGGCGTTTCCTTTAGGAGTATCATC
LOC_Os01g32780
Os.7535.1.S1_at--773--9611Chr01:18317760..18317784 (25 bp)
TCATCCATGTAGCTGGCATCTGTTG
LOC_Os01g32780
Os.7535.1.S1_at--710--3551Chr01:18317744..18317768 (25 bp)
CATCTGTTGCAGAACCGAAGACGAT
LOC_Os01g32780
Os.7535.1.S1_at--493--5371Chr01:18317728..18317752 (25 bp)
GAAGACGATGAACACCCAACTTGTG
LOC_Os01g32780
Target Sequence 
GATTTACTGATCGTTGGGAGTCACAGCCGTGGACCTGTACAAAGGTTGTTTCTTGGAAGTGTCAGCAATTACTGTATGCA
TCATTCGAAGTGCCCAGTTCTTGTTGTGAAGAAGCAGGAGTAAATAAGCTTTCCGAATCTCAATAAAAATCTTTGTGTAT
TGTCGATGTGTTATCCTCAACAATGCAATAAACAAAGCCGTATTAGATGATATTCAGATAACTGAATAATGTATTGTGTA
AATAGTCAAGATTATCTTGCAAATAAATATCCGCTTCTTGTTGCTGTAAAGTAAGGGCGTTTCCTTTAGGAGTATCATCC
ATGTAGCTGGCATCTGTTGCAGAACCGAAGACGATGAACACCCAACTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7535.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis