Browse Element(s) Details


Os.22605.1.S1_at

Description gb:AK069825.1
DB_XREF= gi:32979849
TID=Os.22605.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22605 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 26S proteasome subunit (P0520B06.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023028J18, full insert sequence.
FL= gb:AK069825.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3280011/11PCI domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32770Os.22577.2.S1_x_at11/111+18302726..18304161expressed protein
LOC_Os01g32770Os.22577.1.S1_x_at11/111+18302726..18304161expressed protein
LOC_Os01g32780Os.7535.1.S1_at11/111+18317674..18320608universal stress protein family protein, expressed
LOC_Os01g32790Os.13027.1.S1_at9/111+18321451..18324615expressed protein
LOC_Os01g32800Os.22605.1.S1_at11/111+18326150..18329709PCI domain containing protein, expressed
LOC_Os01g32810OsAffx.21149.1.S1_x_at7/111+18331624..18331974hypothetical protein
LOC_Os01g32830Os.26460.1.S1_a_at11/111+18340522..18343873expressed protein
LOC_Os01g32830Os.26460.2.S1_x_at10/111+18340522..18343873expressed protein
LOC_Os01g32830Os.53828.1.S1_at1/111+18340522..18343873expressed protein
LOC_Os01g32840Os.53269.1.S1_at11/111+18348854..18351596expressed protein
LOC_Os01g32840OsAffx.21148.2.S1_at9/111+18348854..18351596expressed protein
LOC_Os01g32840OsAffx.18305.1.S1_x_at1/111+18348854..18351596expressed protein
LOC_Os01g32849Os.54264.1.S1_at11/111+18353418..18357190expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0030163biological_processprotein catabolism
GO:0005634cellular_componentnucleus
GO:0008541cellular_componentproteasome regulatory particle, lid subcomplex (sensu Eukaryota)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22605.1.S1_at--960--1211Chr01:18326570..18326594 (25 bp)
AGTTCACACTACACTGTTGTCAGTT
LOC_Os01g32800
Os.22605.1.S1_at--761--8331Chr01:18326522..18326546 (25 bp)
GGCTGCATAACTTATCGACCACTTG
LOC_Os01g32800
Os.22605.1.S1_at--622--10811Chr01:18326500..18326524 (25 bp)
TTGTCCTTTCGCTATACGAGCTTGG
LOC_Os01g32800
Os.22605.1.S1_at--140--7831Chr01:18326477..18326501 (25 bp)
GGTCAACAAGGCTGCGGTGCTTAAT
LOC_Os01g32800
Os.22605.1.S1_at--327--6411Chr01:18326445..18326469 (25 bp)
GATCTGGCTGTGGTGCTTATAGTTT
LOC_Os01g32800
Os.22605.1.S1_at--712--2491Chr01:18326407..18326431 (25 bp)
AACATGTTGCCTTGGATATTTCCCT
LOC_Os01g32800
Os.22605.1.S1_at--763--231Chr01:18326392..18326416 (25 bp)
ATATTTCCCTGCGTCCTGTTGATCA
LOC_Os01g32800
Os.22605.1.S1_at--331--7971Chr01:18326367..18326391 (25 bp)
GGATCTGTAATTTCACCCTTTCTTT
LOC_Os01g32800
Os.22605.1.S1_at--683--10131Chr01:18326342..18326366 (25 bp)
TATCCTTTGGGCATTGAGTCCTGGA
LOC_Os01g32800
Os.22605.1.S1_at--164--5031Chr01:18326230..18326254 (25 bp)
GCAGAGGATATTTTCCCCTTTTATT
LOC_Os01g32800
Os.22605.1.S1_at--417--8151Chr01:18326191..18326215 (25 bp)
GGAAACTCTAGCTGATTCCCGTTGT
LOC_Os01g32800
Target Sequence 
AGTTCACACTACACTGTTGTCAGTTGAGGCAGAGACCCCTGATCTTGTGGCTGCATAACTTATCGACCACTTGTCCTTTC
GCTATACGAGCTTGGTCAACAAGGCTGCGGTGCTTAATGAGAGGTGATCTGGCTGTGGTGCTTATAGTTTTCTGGAGAAT
GAGAACATGTTGCCTTGGATATTTCCCTGCGTCCTGTTGATCAGGATCTGTAATTTCACCCTTTCTTTTATCCTTTGGGC
ATTGAGTCCTGGAGCTATCACGGAAAAGATACAAACGGGCCAAAAGTTTCATACCGGCAAGATGTTATCGTAGTTCTTTT
AGTCAAATTTAGATTGTAATGCAGAGGATATTTTCCCCTTTTATTTTTACATGGATGCAGGAAACTCTAGCTGATTCCCG
TTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22605.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis