Browse Element(s) Details


Os.11623.1.S1_a_at

Description gb:AK069071.1
DB_XREF= gi:32979095
TID=Os.11623.1
CNT=26
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.11623 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0035F15.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023010H01, full insert sequence.
FL= gb:AK060286.1 gb:AK121003.1 gb:AK069071.1 gb:AK061162.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2009011/11Cellulose synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20050Os.24831.1.S1_x_at9/1110+9732797..9735020retrotransposon protein, putative, unclassified
LOC_Os10g20050Os.24831.3.S1_x_at6/1110+9732797..9735020retrotransposon protein, putative, unclassified
LOC_Os10g20050Os.24831.4.S1_x_at2/1110+9732797..9735020retrotransposon protein, putative, unclassified
LOC_Os10g20060OsAffx.20494.1.S1_x_at11/1110+9741844..9742850hypothetical protein
LOC_Os10g20060OsAffx.20494.2.S1_at10/1110+9741844..9742850hypothetical protein
LOC_Os10g20070Os.20602.2.S1_x_at11/1110+9744749..9746929hAT family dimerisation domain containing protein
LOC_Os10g20080OsAffx.18305.1.S1_at11/1110+9748013..9749270hypothetical protein
LOC_Os10g20080OsAffx.18305.1.S1_x_at11/1110+9748013..9749270hypothetical protein
LOC_Os10g20080Os.53269.1.S1_at1/1110+9748013..9749270hypothetical protein
LOC_Os10g20090Os.11623.1.S1_a_at11/1110+9758099..9763654Cellulose synthase family protein, expressed
LOC_Os10g20100NANA10+9765652..9766167hypothetical protein
LOC_Os10g20120OsAffx.30458.2.S1_at11/1110+9770391..9772793D-mannose binding lectin family protein, expressed
LOC_Os10g20120OsAffx.30458.1.S1_x_at3/1110+9770391..9772793D-mannose binding lectin family protein, expressed
LOC_Os10g20139OsAffx.30457.3.S1_s_at11/1110+9776422..9781090transposon protein, putative, unclassified
LOC_Os10g20139OsAffx.30457.1.S1_s_at10/1110+9776422..9781090transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000271biological_processpolysaccharide biosynthesis
GO:0016740molecular_functiontransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11623.1.S1_a_at--425--8491Chr10:9762883..9762907 (25 bp)
TGGCTACTGGCATTTCTTACCGTCA
LOC_Os10g20090
Os.11623.1.S1_a_at--286--10451Chr10:9762899..9762923 (25 bp)
TTACCGTCATCCTCAAGACCTTAGG
LOC_Os10g20090
Os.11623.1.S1_a_at--694--6151Chr10:9762943..9762967 (25 bp)
GAGGTCACCCGCAAAGACAAGAGCA
LOC_Os10g20090
Os.11623.1.S1_a_at--680--5111Chr10:9762965..9762989 (25 bp)
GCACATCAGATGGTGATTCCAACAC
LOC_Os10g20090
Os.11623.1.S1_a_at--505--5871Chr10:9762994..9763018 (25 bp)
GAGCCTGAGCCAGGGAGGTTCACCT
LOC_Os10g20090
Os.11623.1.S1_a_at--700--7871Chr10:9763010..9763034 (25 bp)
GGTTCACCTTCGACGAATCGACGGT
LOC_Os10g20090
Os.11623.1.S1_a_at--1104--5251Chr10:9763024..9763048 (25 bp)
GAATCGACGGTGTTCATTCCCGTGA
LOC_Os10g20090
Os.11623.1.S1_a_at--95--91Chr10:9763039..9763063 (25 bp)
ATTCCCGTGACAGCACTTGCAATGT
LOC_Os10g20090
Os.11623.1.S1_a_at--525--2871Chr10:9763065..9763089 (25 bp)
AAGTGTCATTGCAATCGCTGTAGGA
LOC_Os10g20090
Os.11623.1.S1_a_at--914--10391Chr10:9763103..9763127 (25 bp)
TTTTGGTGACAACGGAAGGCTTGCC
LOC_Os10g20090
Os.11623.1.S1_a_at--456--7711Chr10:9763129..9763153 (25 bp)
GGTGGCCCTGGTATCAGTGAATTCA
LOC_Os10g20090
Target Sequence 
TGGCTACTGGCATTTCTTACCGTCATCCTCAAGACCTTAGGCTTCTCCGAGACTGTGTTCGAGGTCACCCGCAAAGACAA
GAGCACATCAGATGGTGATTCCAACACCGATGAGCCTGAGCCAGGGAGGTTCACCTTCGACGAATCGACGGTGTTCATTC
CCGTGACAGCACTTGCAATGTTAAGTGTCATTGCAATCGCTGTAGGAGCATGGAGGGTGGTTTTGGTGACAACGGAAGGC
TTGCCCGGTGGCCCTGGTATCAGTGAATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11623.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis