Browse Element(s) Details


OsAffx.11287.1.S1_at

Description tigr:9629.m03060
TID=OsAffx.11287.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3274011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32710OsAffx.2134.1.S1_at10/111+18259699..18261206hydroxyproline-rich glycoprotein family protein, putative
LOC_Os01g32720Os.17016.1.S1_at10/111+18262735..18273925expressed protein
LOC_Os01g32730Os.9779.1.S1_at11/111+18274599..18278510tetratricopeptide repeat, putative, expressed
LOC_Os01g32740OsAffx.11287.1.S1_at11/111+18283071..18283452hypothetical protein
LOC_Os01g32750Os.11636.1.S1_at11/111+18287711..18295390TATA box-binding protein-associated factor, putative, expressed
LOC_Os01g32760NANA1+18296539..18298530hypothetical protein
LOC_Os01g32770Os.22577.2.S1_x_at11/111+18302726..18304161expressed protein
LOC_Os01g32770Os.22577.1.S1_x_at11/111+18302726..18304161expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11287.1.S1_at--708--1531Chr01:18283101..18283125 (25 bp)
AGCTTTTTTAGGTCTGTAACGCAGC
LOC_Os01g32740
OsAffx.11287.1.S1_at--304--10451Chr01:18283108..18283132 (25 bp)
TTAGGTCTGTAACGCAGCAGAAGCT
LOC_Os01g32740
OsAffx.11287.1.S1_at--45--4871Chr01:18283130..18283154 (25 bp)
GCTATGGCAAAAACTTATGAACACA
LOC_Os01g32740
OsAffx.11287.1.S1_at--968--5491Chr01:18283148..18283172 (25 bp)
GAACACATTATGCAAAACCGACAAC
LOC_Os01g32740
OsAffx.11287.1.S1_at--648--2111Chr01:18283351..18283373 (23 bp)
ACAGGAATAATCATGGCCTATCAGA
LOC_Os01g32740
OsAffx.11287.1.S1_at--491--8431Chr01:18283363..18283387 (25 bp)
GGCCTATCAGATATGCTCTGCACTT
LOC_Os01g32740
OsAffx.11287.1.S1_at--646--9091Chr01:18283376..18283400 (25 bp)
TGCTCTGCACTTTCTATGGGAACCA
LOC_Os01g32740
OsAffx.11287.1.S1_at--3--9491Chr01:18283379..18283403 (25 bp)
TCTGCACTTTCTATGGGAACCACGG
LOC_Os01g32740
OsAffx.11287.1.S1_at--42--8551Chr01:18283388..18283412 (25 bp)
TCTATGGGAACCACGGTATTCCTTT
LOC_Os01g32740
OsAffx.11287.1.S1_at--295--5431Chr01:18283395..18283419 (25 bp)
GAACCACGGTATTCCTTTCCGATTG
LOC_Os01g32740
OsAffx.11287.1.S1_at--283--4331Chr01:18283398..18283422 (25 bp)
CCACGGTATTCCTTTCCGATTGCGG
LOC_Os01g32740
Target Sequence 
AGCTTTTTTAGGTCTGTAACGCAGCAGAAGCTATGGCAAAAACTTATGAACACATTATGCAAAACCGACAACAAGAGCAA
CAGGAATAATCATGGCCTATCAGATATGCTCTGCACTTTCTATGGGAACCACGGTATTCCTTTCCGATTGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11287.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis