Browse Element(s) Details


Os.1322.1.S1_at

Description gb:AF016897.1
DB_XREF= gi:2384759
GEN=OsGDI2
TID=Os.1322.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1322 (NCBI UniGene Cluster)
DEF=Oryza sativa GDP dissociation inhibitor protein OsGDI2 (OsGDI2) mRNA, complete cds.
PROD=GDP dissociation inhibitor protein OsGDI2
FL= gb:AK073143.1 gb:AF016897.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2386011/11Rab GDP dissociation inhibitor alpha, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23820OsAffx.26988.1.S1_at11/115+13612408..13613059retrotransposon, putative, centromere-specific
LOC_Os05g23820OsAffx.26988.1.S1_x_at11/115+13612408..13613059retrotransposon, putative, centromere-specific
LOC_Os05g23830OsAffx.14829.1.S1_x_at2/115+13618392..13620045endo-1,4-beta-xylanase, putative
LOC_Os05g23830OsAffx.6363.1.S1_at1/115+13618392..13620045endo-1,4-beta-xylanase, putative
LOC_Os05g23840Os.46317.1.A1_at11/115+13624655..13628340expressed protein
LOC_Os05g23840OsAffx.14796.1.S1_at10/115+13624655..13628340expressed protein
LOC_Os05g23850OsAffx.4410.1.S1_at11/115+13630921..13633741expressed protein
LOC_Os05g23850Os.12799.1.S1_s_at11/115+13630921..13633741expressed protein
LOC_Os05g23850Os.22702.1.S1_x_at3/115+13630921..13633741expressed protein
LOC_Os05g23850Os.27530.1.S1_at1/115+13630921..13633741expressed protein
LOC_Os05g23860Os.1322.1.S1_at11/115+13637844..13642862Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os05g23870NANA5+13645973..13648082transposon protein, putative, Mutator sub-class
LOC_Os05g23880Os.27405.1.S1_at9/115+13656584..13662481Lipoxygenase family protein, expressed
LOC_Os05g23880OsAffx.10342.1.S1_x_at1/115+13656584..13662481Lipoxygenase family protein, expressed
LOC_Os05g23890NANA5+13662507..13664470retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0015031biological_processprotein transport
GO:0048227biological_processplasma membrane to endosome transport
GO:0005093molecular_functionRab GDP-dissociation inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1322.1.S1_at--642--3031Chr05:13641773..13641797 (25 bp)
AATCCACAGTCCGAGCTAAAGCCTG
LOC_Os05g23860
Os.1322.1.S1_at--140--9951Chr05:13641851..13641875 (25 bp)
TACGAACCTGTGAATGAACCATCTC
LOC_Os05g23860
Os.1322.1.S1_at--308--6891Chr05:13642039..13642061 (23 bp)
GTATACATTGATCACCGGAAAGGCT
LOC_Os05g23860
Os.1322.1.S1_at--436--6111Chr05:13642345..13642369 (25 bp)
GAGTGCTGCCAGTGCCGCTGAAGAA
LOC_Os05g23860
Os.1322.1.S1_at--498--251Chr05:13642409..13642433 (25 bp)
ATATGCTTTTTCTTGGTGGGTACCG
LOC_Os05g23860
Os.1322.1.S1_at--428--7491Chr05:13642424..13642448 (25 bp)
GTGGGTACCGCAGGACAGATCGTAA
LOC_Os05g23860
Os.1322.1.S1_at--891--6771Chr05:13642480..13642504 (25 bp)
GTTATACCGAGTGTTCTGGCCAATA
LOC_Os05g23860
Os.1322.1.S1_at--1046--2551Chr05:13642532..13642556 (25 bp)
AACTGTTGGCCAAGATGACTGAAAT
LOC_Os05g23860
Os.1322.1.S1_at--503--7031Chr05:13642604..13642628 (25 bp)
GTACACACTACACAATGACGGTCGG
LOC_Os05g23860
Os.1322.1.S1_at--927--9331Chr05:13642625..13642649 (25 bp)
TCGGGCGTTTTGTGACTGATGTATC
LOC_Os05g23860
Os.1322.1.S1_at--410--7951Chr05:13642659..13642683 (25 bp)
GGATAATTTTGCATGTCTACTTCTG
LOC_Os05g23860
Target Sequence 
AATCCACAGTCCGAGCTAAAGCCTGGAATTGATCTACTTGGTCAAGTAGATGAGCTATTTTTTGATATCTATGATAGATA
CGAACCTGTGAATGAACCATCTCTTGATAATTGTTTTGTCTCAACTAGCTATGATGCCACCACACATTTTGAGACAACGG
TGACAGATGTTCTTAACATGTATACATTGATCACCGGAAAGGCTGTTGATCTCAGTGTTGATTTGAGTGCTGCCAGTGCC
GCTGAAGAATATTAGATTTCACAACCAAAGCTCAATCATTTCACAAAGATATGCTTTTTCTTGGTGGGTACCGCAGGACA
GATCGTAACGAGTGACTGGTATAGTTATTCAAACTCCANGTTATACCGAGTGTTCTGGCCAATATGGCTTGTTGCTAGCA
GTAATATGCANAACTGTTGGCCAAGATGACTGAAATGATGGTGGTTTAATTTGATACTTCAGTAATGCAATGGTGTAAAC
AGTGTACACACTACACAATGACGGTCGGGCGTTTTGTGACTGATGTATCATAACTGCTGGATAATTTTGCATGTCTACTT
CTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1322.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis