Browse Element(s) Details


OsAffx.26988.1.S1_x_at

Description tigr:9633.m02118
TID=OsAffx.26988.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2382011/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23790OsAffx.14795.1.S1_at11/115+13585280..13588875retrotransposon, putative, centromere-specific, expressed
LOC_Os05g23800OsAffx.4408.1.S1_at10/115+13590328..13594018RNA recognition motif family protein
LOC_Os05g23810OsAffx.30487.1.S1_at3/115+13603340..13608640retrotransposon protein, putative, unclassified
LOC_Os05g23810Os.5711.1.S1_at2/115+13603340..13608640retrotransposon protein, putative, unclassified
LOC_Os05g23810OsAffx.30488.1.S1_at1/115+13603340..13608640retrotransposon protein, putative, unclassified
LOC_Os05g23820OsAffx.26988.1.S1_at11/115+13612408..13613059retrotransposon, putative, centromere-specific
LOC_Os05g23820OsAffx.26988.1.S1_x_at11/115+13612408..13613059retrotransposon, putative, centromere-specific
LOC_Os05g23830OsAffx.14829.1.S1_x_at2/115+13618392..13620045endo-1,4-beta-xylanase, putative
LOC_Os05g23830OsAffx.6363.1.S1_at1/115+13618392..13620045endo-1,4-beta-xylanase, putative
LOC_Os05g23840Os.46317.1.A1_at11/115+13624655..13628340expressed protein
LOC_Os05g23840OsAffx.14796.1.S1_at10/115+13624655..13628340expressed protein
LOC_Os05g23850OsAffx.4410.1.S1_at11/115+13630921..13633741expressed protein
LOC_Os05g23850Os.12799.1.S1_s_at11/115+13630921..13633741expressed protein
LOC_Os05g23850Os.22702.1.S1_x_at3/115+13630921..13633741expressed protein
LOC_Os05g23850Os.27530.1.S1_at1/115+13630921..13633741expressed protein
LOC_Os05g23860Os.1322.1.S1_at11/115+13637844..13642862Rab GDP dissociation inhibitor alpha, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26988.1.S1_x_at--820--9451Chr05:13612982..13613006 (25 bp)
TCGGCCACCTGCTACTGTGCTAAAT
LOC_Os05g23820
OsAffx.26988.1.S1_x_at--702--9912Chr03:20590597..20590616 (20 bp)
TACTGTGCTAAATTCAAATGGCCGC
NONE
OsAffx.26988.1.S1_x_at--55--2971Chr05:13612954..13612978 (25 bp)
AATGGCCGCCAAATGAGCATACGAG
LOC_Os05g23820
OsAffx.26988.1.S1_x_at--260--2571Chr05:13612876..13612900 (25 bp)
AACGGATCTAGCCTTGTTCCAAAAT
LOC_Os05g23820
OsAffx.26988.1.S1_x_at--693--3951Chr05:13612874..13612898 (25 bp)
CGGATCTAGCCTTGTTCCAAAATTC
LOC_Os05g23820
OsAffx.26988.1.S1_x_at--455--5912Chr11:8964104..8964344 (25 bp)
GATCTAGCCTTGTTCCAAAATTCTA
NONE
OsAffx.26988.1.S1_x_at--229--1691Chr05:13612867..13612891 (25 bp)
AGCCTTGTTCCAAAATTCTATCACA
LOC_Os05g23820
OsAffx.26988.1.S1_x_at--629--2451Chr05:13612856..13612880 (25 bp)
AAAATTCTATCACAGTCGACAGCAA
LOC_Os05g23820
OsAffx.26988.1.S1_x_at--632--3691Chr05:13612850..13612874 (25 bp)
CTATCACAGTCGACAGCAATTGCAA
LOC_Os05g23820
OsAffx.26988.1.S1_x_at--1025--371Chr05:13612848..13612872 (25 bp)
ATCACAGTCGACAGCAATTGCAAAA
LOC_Os05g23820
OsAffx.26988.1.S1_x_at--894--7211Chr05:13612842..13612866 (25 bp)
GTCGACAGCAATTGCAAAAACAAGG
LOC_Os05g23820
Target Sequence 
TCGGCCACCTGCTACTGTGCTAAATTCAAATGGCCGCCAAATGAGCATACGAGCTCCATTTTGGGTCCATGAGTACTTGA
TAGAAAGCTCACGAAGTCCTCTTTCCAACGGATCTAGCCTTGTTCCAAAATTCTATCACAGTCGACAGCAATTGCAAAAA
CAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26988.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis