Browse Element(s) Details


OsAffx.14796.1.S1_at

Description tigr:9633.m02120
TID=OsAffx.14796.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2384010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23810OsAffx.30487.1.S1_at3/115+13603340..13608640retrotransposon protein, putative, unclassified
LOC_Os05g23810Os.5711.1.S1_at2/115+13603340..13608640retrotransposon protein, putative, unclassified
LOC_Os05g23810OsAffx.30488.1.S1_at1/115+13603340..13608640retrotransposon protein, putative, unclassified
LOC_Os05g23820OsAffx.26988.1.S1_at11/115+13612408..13613059retrotransposon, putative, centromere-specific
LOC_Os05g23820OsAffx.26988.1.S1_x_at11/115+13612408..13613059retrotransposon, putative, centromere-specific
LOC_Os05g23830OsAffx.14829.1.S1_x_at2/115+13618392..13620045endo-1,4-beta-xylanase, putative
LOC_Os05g23830OsAffx.6363.1.S1_at1/115+13618392..13620045endo-1,4-beta-xylanase, putative
LOC_Os05g23840Os.46317.1.A1_at11/115+13624655..13628340expressed protein
LOC_Os05g23840OsAffx.14796.1.S1_at10/115+13624655..13628340expressed protein
LOC_Os05g23850OsAffx.4410.1.S1_at11/115+13630921..13633741expressed protein
LOC_Os05g23850Os.12799.1.S1_s_at11/115+13630921..13633741expressed protein
LOC_Os05g23850Os.22702.1.S1_x_at3/115+13630921..13633741expressed protein
LOC_Os05g23850Os.27530.1.S1_at1/115+13630921..13633741expressed protein
LOC_Os05g23860Os.1322.1.S1_at11/115+13637844..13642862Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os05g23870NANA5+13645973..13648082transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14796.1.S1_at--330--3691Chr05:13625301..13625325 (25 bp)
CTATATCAGCAAGAGGCAAGTCGCT
LOC_Os05g23840
OsAffx.14796.1.S1_at--276--1291Chr05:13625312..13625336 (25 bp)
AGAGGCAAGTCGCTGATAACCCCTC
LOC_Os05g23840
OsAffx.14796.1.S1_at--1111--3751Chr05:13625337..13625361 (25 bp)
CTCTTCTCCTCGATTCAGCGATAAA
LOC_Os05g23840
OsAffx.14796.1.S1_at--1112--4031Chr05:13625347..13625371 (25 bp)
CGATTCAGCGATAAAGCCTTTTGGA
LOC_Os05g23840
OsAffx.14796.1.S1_at--1158--1651Chr05:13625361..13625385 (25 bp)
AGCCTTTTGGATCTTGGGCAACTCA
LOC_Os05g23840
OsAffx.14796.1.S1_at--134--8571Chr05:13625368..13625392 (25 bp)
TGGATCTTGGGCAACTCATTGTCTG
LOC_Os05g23840
OsAffx.14796.1.S1_at--431--6431Chr05:13625370..13625394 (25 bp)
GATCTTGGGCAACTCATTGTCTGGA
LOC_Os05g23840
OsAffx.14796.1.S1_at--574--3611Chr05:13625373..13625397 (25 bp)
CTTGGGCAACTCATTGTCTGGATCT
LOC_Os05g23840
OsAffx.14796.1.S1_at--657--8231Chr05:13625377..13625401 (25 bp)
GGCAACTCATTGTCTGGATCTAATA
LOC_Os05g23840
OsAffx.14796.1.S1_at--395--7171Chr05:13625388..13625412 (25 bp)
GTCTGGATCTAATAATAACCTAGGG
LOC_Os05g23840
OsAffx.14796.1.S1_at--1078--3071NONE
AATAACCTAGGGTATTATGAGGCTT
NONE
Target Sequence 
CTATATCAGCAAGAGGCAAGTCGCTGATAACCCCTCCTCTTCTCCTCGATTCAGCGATAAAGCCTTTTGGATCTTGGGCA
ACTCATTGTCTGGATCTAATAATAACCTAGGGTATTATGAGGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14796.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis