Browse Element(s) Details


Os.46317.1.A1_at

Description gb:AK101238.1
DB_XREF= gi:32986447
TID=Os.46317.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.46317 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033031L12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033031L12, full insert sequence.
FL= gb:AK101238.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2384011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23810OsAffx.30487.1.S1_at3/115+13603340..13608640retrotransposon protein, putative, unclassified
LOC_Os05g23810Os.5711.1.S1_at2/115+13603340..13608640retrotransposon protein, putative, unclassified
LOC_Os05g23810OsAffx.30488.1.S1_at1/115+13603340..13608640retrotransposon protein, putative, unclassified
LOC_Os05g23820OsAffx.26988.1.S1_at11/115+13612408..13613059retrotransposon, putative, centromere-specific
LOC_Os05g23820OsAffx.26988.1.S1_x_at11/115+13612408..13613059retrotransposon, putative, centromere-specific
LOC_Os05g23830OsAffx.14829.1.S1_x_at2/115+13618392..13620045endo-1,4-beta-xylanase, putative
LOC_Os05g23830OsAffx.6363.1.S1_at1/115+13618392..13620045endo-1,4-beta-xylanase, putative
LOC_Os05g23840Os.46317.1.A1_at11/115+13624655..13628340expressed protein
LOC_Os05g23840OsAffx.14796.1.S1_at10/115+13624655..13628340expressed protein
LOC_Os05g23850OsAffx.4410.1.S1_at11/115+13630921..13633741expressed protein
LOC_Os05g23850Os.12799.1.S1_s_at11/115+13630921..13633741expressed protein
LOC_Os05g23850Os.22702.1.S1_x_at3/115+13630921..13633741expressed protein
LOC_Os05g23850Os.27530.1.S1_at1/115+13630921..13633741expressed protein
LOC_Os05g23860Os.1322.1.S1_at11/115+13637844..13642862Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os05g23870NANA5+13645973..13648082transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46317.1.A1_at--609--3471Chr05:13627744..13627768 (25 bp)
CAGGGATGCTGTGCCAATAATGGTT
LOC_Os05g23840
Os.46317.1.A1_at--175--2091Chr05:13627776..13627800 (25 bp)
ACATACTGAGCGACCCTGCTAATAA
LOC_Os05g23840
Os.46317.1.A1_at--490--4611Chr05:13627785..13627809 (25 bp)
GCGACCCTGCTAATAACGAATTGAG
LOC_Os05g23840
Os.46317.1.A1_at--739--7511Chr05:13627926..13627950 (25 bp)
GTGGATTATTATTTTCTTGGCTACA
LOC_Os05g23840
Os.46317.1.A1_at--38--8691Chr05:13627963..13627987 (25 bp)
TGTGAAAGCGCATATCAGATATCAT
LOC_Os05g23840
Os.46317.1.A1_at--60--6511Chr05:13628159..13628183 (25 bp)
GATTTTACTGTGAGAGCCCTAACCC
LOC_Os05g23840
Os.46317.1.A1_at--762--2611Chr05:13628179..13628203 (25 bp)
AACCCTACGTGCTCTGTTTTTTGAT
LOC_Os05g23840
Os.46317.1.A1_at--181--7091Chr05:13628210..13628234 (25 bp)
GTCAAGCAGCGATATGTCCATCAGT
LOC_Os05g23840
Os.46317.1.A1_at--768--9631Chr05:13628230..13628254 (25 bp)
TCAGTCCATGTTCCGGCTCAACTAA
LOC_Os05g23840
Os.46317.1.A1_at--978--4811Chr05:13628245..13628269 (25 bp)
GCTCAACTAACCTTGCTTTATCGGA
LOC_Os05g23840
Os.46317.1.A1_at--912--3651Chr05:13628299..13628323 (25 bp)
CTTCTTCCGTTTCATTCTAGAATTT
LOC_Os05g23840
Target Sequence 
CAGGGATGCTGTGCCAATAATGGTTTTGCNCCACATACTGAGCGACCCTGCTAATAACGAATTGAGGTGATATTTATTCA
AGGAATGTTTACCAAGTATCNCAATCGAATTCCATGGACAGAAAAATTGAATTTGGATGAACATTAATTTNTTGGCTACA
TATGACAGTGGATGTGCTGGATGTGGATTATTATTTTCTTGGCTACAAGACATTGTGGATGTGAAAGCGCATATCAGATA
TCATGGGAATNGGNCAAGAATGTCGGGTGGCAGATTTNTGATGCTGGGATTTATCAGGATTGCTAGCGTAAGGNGTNGCT
TTTTCACTCTACTCTGCTTGGTTTNGATGCTTAGTTTAANTGTTGTAAGGTAGTTACCAGTTGTAAATGNCTGTNTATCG
TTTTNTCATGTTAAATGATTTTACTGTGAGAGCCCTAACCCTACGTGCTCTGTTTTTTGATATGGCTGTCAAGCAGCGAT
ATGTCCATCAGTCCATGTTCCGGCTCAACTAACCTTGCTTTATCGGATAGAACTTGTGGAAAGGGGAGGGATTTTACTTC
TTCCGTTTCATTCTAGAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46317.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis