Browse Element(s) Details


Os.27405.1.S1_at

Description gb:AK064795.1
DB_XREF= gi:32974813
TID=Os.27405.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27405 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000C19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000C19, full insert sequence.
FL= gb:AK060791.1 gb:AK064795.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g238809/11Lipoxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23850OsAffx.4410.1.S1_at11/115+13630921..13633741expressed protein
LOC_Os05g23850Os.12799.1.S1_s_at11/115+13630921..13633741expressed protein
LOC_Os05g23850Os.22702.1.S1_x_at3/115+13630921..13633741expressed protein
LOC_Os05g23850Os.27530.1.S1_at1/115+13630921..13633741expressed protein
LOC_Os05g23860Os.1322.1.S1_at11/115+13637844..13642862Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os05g23870NANA5+13645973..13648082transposon protein, putative, Mutator sub-class
LOC_Os05g23880Os.27405.1.S1_at9/115+13656584..13662481Lipoxygenase family protein, expressed
LOC_Os05g23880OsAffx.10342.1.S1_x_at1/115+13656584..13662481Lipoxygenase family protein, expressed
LOC_Os05g23890NANA5+13662507..13664470retrotransposon protein, putative, LINE subclass
LOC_Os05g23900OsAffx.26989.1.S1_at11/115+13667941..13668614hypothetical protein
LOC_Os05g23910OsAffx.26990.1.S1_at11/115+13671818..13673285Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os05g23910Os.24936.1.A1_at9/115+13671818..13673285Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os05g23924Os.9795.1.S1_at11/115+13677444..13685352Glycosyl hydrolase family 10 protein, expressed
LOC_Os05g23924OsAffx.26991.1.S1_at10/115+13677444..13685352Glycosyl hydrolase family 10 protein, expressed
LOC_Os05g23924Os.12284.1.S1_at1/115+13677444..13685352Glycosyl hydrolase family 10 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009414biological_processresponse to water deprivation
GO:0009611biological_processresponse to wounding
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009688biological_processabscisic acid biosynthesis
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0030397biological_processmembrane disassembly
GO:0040007biological_processgrowth
GO:0009507cellular_componentchloroplast
GO:0016165molecular_functionlipoxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27405.1.S1_at--530--8891Chr05:13662078..13662102 (25 bp)
TGAGGGTGCCGTACACGCTGCTCTA
LOC_Os05g23880
Os.27405.1.S1_at--912--6131Chr05:13662150..13662174 (25 bp)
GAGGGATACCCAACAGCGTCTCCAT
LOC_Os05g23880
Os.27405.1.S1_at--294--2491Chr05:13662161..13662185 (25 bp)
AACAGCGTCTCCATCTGACACGATT
LOC_Os05g23880
Os.27405.1.S1_at--64--9491Chr05:13662174..13662198 (25 bp)
TCTGACACGATTCATCATCCTTCTT
LOC_Os05g23880
Os.27405.1.S1_at--508--571Chr05:13662190..13662214 (25 bp)
ATCCTTCTTCTCTTATACTTCATCT
LOC_Os05g23880
Os.27405.1.S1_at--977--10411Chr05:13662202..13662226 (25 bp)
TTATACTTCATCTATCCGACTCGAC
LOC_Os05g23880
Os.27405.1.S1_at--110--9351Chr05:13662222..13662246 (25 bp)
TCGACTCGACGCGTGTGGAATGTAA
LOC_Os05g23880
Os.27405.1.S1_at--219--10413Chr12:5903472..5903491 (20 bp)
TTATTGTTCTAATCCAAAAGCCCGG
NONE
Os.27405.1.S1_at--666--8572Chr07:1746423..1746447 (25 bp)
TGGATATAGGCCGATCTCTCTTCAG
NONE
Os.27405.1.S1_at--717--451NONE
ATCTCTCTTCAGAACGGCTCAGTAA
NONE
Os.27405.1.S1_at--812--2812Chr07:1746460..1746484 (25 bp)
AAGATTCTTTCCAAAGTGCTTGCAA
NONE
Target Sequence 
TGAGGGTGCCGTACACGCTGCTCTACCCGGACGCCGGCGACGTCGCCGGCAAGGAGAAGGGGATCACCGGGAGAGGGATA
CCCAACAGCGTCTCCATCTGACACGATTCATCATCCTTCTTCTCTTATACTTCATCTATCCGACTCGACTCGACGCGTGT
GGAATGTAAAGTTCTCTGCTTTTCTTTTTCTTTCTTTTCGTTTGAGAGTTTTGGTGTTGGGGATGTGAAATTGAGATTGA
TTGGTTGGTTTGGATTGGAGAATTGATGAGCAAACTGTGATGCAGAATTCAATACATGTAATTATTGTTCTAATCCAAAA
GCCCGGNAAAGAAAACACGGTCGATGGATATAGGCCGATCTCTCTTCAGAACGGCTCAGTAAAGATTCTTTCCAAAGTGC
TTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27405.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis