Browse Element(s) Details


Os.9795.1.S1_at

Description gb:AK105545.1
DB_XREF= gi:32990754
TID=Os.9795.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9795 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-128-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-A03, full insert sequence.
FL= gb:AK105545.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2392411/11Glycosyl hydrolase family 10 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23880Os.27405.1.S1_at9/115+13656584..13662481Lipoxygenase family protein, expressed
LOC_Os05g23880OsAffx.10342.1.S1_x_at1/115+13656584..13662481Lipoxygenase family protein, expressed
LOC_Os05g23890NANA5+13662507..13664470retrotransposon protein, putative, LINE subclass
LOC_Os05g23900OsAffx.26989.1.S1_at11/115+13667941..13668614hypothetical protein
LOC_Os05g23910OsAffx.26990.1.S1_at11/115+13671818..13673285Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os05g23910Os.24936.1.A1_at9/115+13671818..13673285Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os05g23924Os.9795.1.S1_at11/115+13677444..13685352Glycosyl hydrolase family 10 protein, expressed
LOC_Os05g23924OsAffx.26991.1.S1_at10/115+13677444..13685352Glycosyl hydrolase family 10 protein, expressed
LOC_Os05g23924Os.12284.1.S1_at1/115+13677444..13685352Glycosyl hydrolase family 10 protein, expressed
LOC_Os05g23940Os.12931.1.S1_at11/115+13694317..13703825Transcription factor TFIIB repeat family protein, expressed
LOC_Os05g23950Os.53153.1.S1_at7/115+13705855..13707029TRAF-type zinc finger family protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9795.1.S1_at--956--2591Chr05:13677946..13677967 (22 bp)
AACGCAGGCTGCATACTTGGAAGAG
LOC_Os05g23924
Os.9795.1.S1_at--343--6131Chr05:13677771..13677795 (25 bp)
GAGTGGCAAACCAAGGAGACCCTGG
LOC_Os05g23924
Os.9795.1.S1_at--650--8051Chr05:13677757..13677781 (25 bp)
GGAGACCCTGGGAACCACCAATGAC
LOC_Os05g23924
Os.9795.1.S1_at--1069--2991Chr05:13677738..13677762 (25 bp)
AATGACCGCGGCTCCTTCAACTTTT
LOC_Os05g23924
Os.9795.1.S1_at--40--3271Chr05:13677721..13677745 (25 bp)
CAACTTTTCTGCCTTCTTGGGAGAA
LOC_Os05g23924
Os.9795.1.S1_at--806--1411Chr05:13677700..13677724 (25 bp)
AGAATACAAGCTCTCGGTCACCTAT
LOC_Os05g23924
Os.9795.1.S1_at--587--451Chr05:13677677..13677701 (25 bp)
ATCTCAACCTCACTGCCGAGGGAAC
LOC_Os05g23924
Os.9795.1.S1_at--836--6131Chr05:13677660..13677684 (25 bp)
GAGGGAACCTTCTCGCTGGCCCATA
LOC_Os05g23924
Os.9795.1.S1_at--1145--1691Chr05:13677627..13677651 (25 bp)
ACCAAGCATATCAACATCCGTCTAT
LOC_Os05g23924
Os.9795.1.S1_at--998--551Chr05:13677612..13677636 (25 bp)
ATCCGTCTATCACCATCATGTTGAA
LOC_Os05g23924
Os.9795.1.S1_at--334--7651Chr05:13677519..13677543 (25 bp)
GGGAGACTCCATACGTTTGTGTTGA
LOC_Os05g23924
Target Sequence 
AACGCAGGCTGCATACTTGGAAGAGNTNCTCCGANAAGGGTTTGCCCATCCATNNGNGNNNNNNNNANTNNTGTGNACGN
CAATGGACACCNATGCTANCTGNTACCANATGTNNCTGACCAACCAGAACTTNCACCAACNCTTCNCTGCGGNGAGATNG
TGNTGNNCAANCTGCTGGGGGAGTGGCAAACCAAGGAGACCCTGGGAACCACCAATGACCGCGGCTCCTTCAACTTTTCT
GCCTTCTTGGGAGAATACAAGCTCTCGGTCACCTATCTCAACCTCACTGCCGAGGGAACCTTCTCGCTGGCCCATAGCGA
CGACACCAAGCATATCAACATCCGTCTATCACCATCATGTTGAAATTGAATTGATTCTTGTGTTATATAGAAGGATGTGA
TGATGAAAACTTGGTAGTGTACCTTAATTAGAGGGAGACTCCATACGTTTGTGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9795.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis